miRNA display CGI


Results 1 - 20 of 57 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18417 5' -55.8 NC_004681.1 + 8819 0.66 0.814305
Target:  5'- cGAUGAagGUCUGCGcGACGCAcCCGa- -3'
miRNA:   3'- aCUGCUg-UAGGCGC-CUGCGUaGGUcc -5'
18417 5' -55.8 NC_004681.1 + 8715 0.66 0.814305
Target:  5'- -aACG-CcgCCGCGGuCGCugaagCCGGGa -3'
miRNA:   3'- acUGCuGuaGGCGCCuGCGua---GGUCC- -5'
18417 5' -55.8 NC_004681.1 + 16788 0.66 0.814305
Target:  5'- cUGGCGGCAUCCcCGGcAUGC--CCgAGGa -3'
miRNA:   3'- -ACUGCUGUAGGcGCC-UGCGuaGG-UCC- -5'
18417 5' -55.8 NC_004681.1 + 32487 0.66 0.814305
Target:  5'- nGAUGGCGUgaagcgcgaCGCGGGCGaCGUCCuGa -3'
miRNA:   3'- aCUGCUGUAg--------GCGCCUGC-GUAGGuCc -5'
18417 5' -55.8 NC_004681.1 + 13988 0.66 0.814305
Target:  5'- gUGGCGGCcUgUGCGuACuCAUCCGGGg -3'
miRNA:   3'- -ACUGCUGuAgGCGCcUGcGUAGGUCC- -5'
18417 5' -55.8 NC_004681.1 + 12490 0.66 0.814305
Target:  5'- cGACGAgCGUcgCCGCGGugGUGgugCCAc- -3'
miRNA:   3'- aCUGCU-GUA--GGCGCCugCGUa--GGUcc -5'
18417 5' -55.8 NC_004681.1 + 37533 0.66 0.813402
Target:  5'- cGAUGACAcCCuugaugugGUGGAUGUccuugaaGUCCGGGg -3'
miRNA:   3'- aCUGCUGUaGG--------CGCCUGCG-------UAGGUCC- -5'
18417 5' -55.8 NC_004681.1 + 14771 0.66 0.813402
Target:  5'- --gUGACG-CCGCGGACGCccuggccAUCCugaAGGc -3'
miRNA:   3'- acuGCUGUaGGCGCCUGCG-------UAGG---UCC- -5'
18417 5' -55.8 NC_004681.1 + 47548 0.66 0.805203
Target:  5'- cUGAUGGCAcUCGUGGAgguugaGCAUCCAc- -3'
miRNA:   3'- -ACUGCUGUaGGCGCCUg-----CGUAGGUcc -5'
18417 5' -55.8 NC_004681.1 + 23615 0.66 0.805203
Target:  5'- cGAUGACGUCCuGCGGGuuggUGCcgCUGGu -3'
miRNA:   3'- aCUGCUGUAGG-CGCCU----GCGuaGGUCc -5'
18417 5' -55.8 NC_004681.1 + 62087 0.66 0.795932
Target:  5'- aUGGCGGCcUCCaUGGGCgGCAUCCu-- -3'
miRNA:   3'- -ACUGCUGuAGGcGCCUG-CGUAGGucc -5'
18417 5' -55.8 NC_004681.1 + 13118 0.66 0.795932
Target:  5'- cGAUGACAgugucagUCGCGGccACGuCGUCCGcGGu -3'
miRNA:   3'- aCUGCUGUa------GGCGCC--UGC-GUAGGU-CC- -5'
18417 5' -55.8 NC_004681.1 + 15179 0.66 0.795932
Target:  5'- cGACGACugGUCaGCaGACGCAcccgUCUGGGu -3'
miRNA:   3'- aCUGCUG--UAGgCGcCUGCGU----AGGUCC- -5'
18417 5' -55.8 NC_004681.1 + 2142 0.66 0.786503
Target:  5'- gUGAgGAUGUCCGCGG-UGCggCCGc- -3'
miRNA:   3'- -ACUgCUGUAGGCGCCuGCGuaGGUcc -5'
18417 5' -55.8 NC_004681.1 + 74835 0.66 0.786503
Target:  5'- gGAgGACAcCCGCggccGGAUGC-UCCAGu -3'
miRNA:   3'- aCUgCUGUaGGCG----CCUGCGuAGGUCc -5'
18417 5' -55.8 NC_004681.1 + 32445 0.66 0.785551
Target:  5'- cGugGGCAUCgcugagcagaucgCGUGGACGCAcaucuUCUcGGa -3'
miRNA:   3'- aCugCUGUAG-------------GCGCCUGCGU-----AGGuCC- -5'
18417 5' -55.8 NC_004681.1 + 15906 0.66 0.776924
Target:  5'- gUGAaGAUcgCCGUGGcCGCGgucaagaccaUCCAGGc -3'
miRNA:   3'- -ACUgCUGuaGGCGCCuGCGU----------AGGUCC- -5'
18417 5' -55.8 NC_004681.1 + 7696 0.66 0.776924
Target:  5'- cGGCGAag-UCGCGGGCGUAggugCCAu- -3'
miRNA:   3'- aCUGCUguaGGCGCCUGCGUa---GGUcc -5'
18417 5' -55.8 NC_004681.1 + 53740 0.66 0.776924
Target:  5'- aUGACGACA-CCGaccaGGGCGCcgUCGu- -3'
miRNA:   3'- -ACUGCUGUaGGCg---CCUGCGuaGGUcc -5'
18417 5' -55.8 NC_004681.1 + 62641 0.66 0.775958
Target:  5'- gGAUGACA-CCGagguagacgguguCGGAgGCGgcugCCAGGg -3'
miRNA:   3'- aCUGCUGUaGGC-------------GCCUgCGUa---GGUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.