Results 21 - 40 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18417 | 5' | -55.8 | NC_004681.1 | + | 13118 | 0.66 | 0.795932 |
Target: 5'- cGAUGACAgugucagUCGCGGccACGuCGUCCGcGGu -3' miRNA: 3'- aCUGCUGUa------GGCGCC--UGC-GUAGGU-CC- -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 26320 | 0.67 | 0.73732 |
Target: 5'- gGGCgGGCAUcgCCGCcGugGCGggCCAGGa -3' miRNA: 3'- aCUG-CUGUA--GGCGcCugCGUa-GGUCC- -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 8383 | 0.67 | 0.727148 |
Target: 5'- uUGGCGGCGUCCGCGccaccGAgGCucUUCAGc -3' miRNA: 3'- -ACUGCUGUAGGCGC-----CUgCGu-AGGUCc -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 28612 | 0.67 | 0.727148 |
Target: 5'- cGugGAgAUgaCCGCGGGgGUGcCCGGGg -3' miRNA: 3'- aCugCUgUA--GGCGCCUgCGUaGGUCC- -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 30946 | 0.67 | 0.767207 |
Target: 5'- gGGCGGCGUgCCGUccuccacGAUGgGUCCGGGc -3' miRNA: 3'- aCUGCUGUA-GGCGc------CUGCgUAGGUCC- -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 33398 | 0.67 | 0.73732 |
Target: 5'- cGGCGuACA-CCGCGG-CGCGaCCGGc -3' miRNA: 3'- aCUGC-UGUaGGCGCCuGCGUaGGUCc -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 74043 | 0.67 | 0.747394 |
Target: 5'- cUGAgGACuugcUCgCGCGGAUGC-UCCGuGGa -3' miRNA: 3'- -ACUgCUGu---AG-GCGCCUGCGuAGGU-CC- -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 15373 | 0.67 | 0.716887 |
Target: 5'- ---aGGCGUUCGCcGACGCcAUCCAGa -3' miRNA: 3'- acugCUGUAGGCGcCUGCG-UAGGUCc -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 32767 | 0.67 | 0.731228 |
Target: 5'- cGGuCGGCAaUCCGCuGGGcCGCucguaccaggaguccGUCCAGGa -3' miRNA: 3'- aCU-GCUGU-AGGCG-CCU-GCG---------------UAGGUCC- -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 40464 | 0.67 | 0.73732 |
Target: 5'- cGAUGACAUugaacgCCGCGGccgACGCcgCCAc- -3' miRNA: 3'- aCUGCUGUA------GGCGCC---UGCGuaGGUcc -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 18391 | 0.67 | 0.753388 |
Target: 5'- aGGCGGCggCCGCGGcggcaaacgccuuCGCAcCCGGa -3' miRNA: 3'- aCUGCUGuaGGCGCCu------------GCGUaGGUCc -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 50146 | 0.67 | 0.755376 |
Target: 5'- cGGCGGCAucUCCGUccaagucGGcaaaugaGCGaCGUCCAGGu -3' miRNA: 3'- aCUGCUGU--AGGCG-------CC-------UGC-GUAGGUCC- -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 42619 | 0.67 | 0.767207 |
Target: 5'- aGugGAUG-CCGgGGGCGCAUuccugCCAGcGg -3' miRNA: 3'- aCugCUGUaGGCgCCUGCGUA-----GGUC-C- -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 66226 | 0.67 | 0.73732 |
Target: 5'- -uGCGACGUCgCGCGGcaaGCGCAUgaagcacaCCAcGGa -3' miRNA: 3'- acUGCUGUAG-GCGCC---UGCGUA--------GGU-CC- -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 2923 | 0.68 | 0.654042 |
Target: 5'- -aGCGGCGguccCCGCGGGCuccguagguuuGCGUCCGGu -3' miRNA: 3'- acUGCUGUa---GGCGCCUG-----------CGUAGGUCc -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 33295 | 0.68 | 0.652983 |
Target: 5'- cGACGcCGgucgcgCCGCGGuguACGCcgggacguucgccGUCCAGGg -3' miRNA: 3'- aCUGCuGUa-----GGCGCC---UGCG-------------UAGGUCC- -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 18492 | 0.68 | 0.654042 |
Target: 5'- aGGCGuuuGCcgCCGCGGcCGCcgCCuGGc -3' miRNA: 3'- aCUGC---UGuaGGCGCCuGCGuaGGuCC- -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 47496 | 0.68 | 0.689871 |
Target: 5'- uUGACGACGUcgcaggaccgcgucgCCGUGG-CGCGUUggCGGGc -3' miRNA: 3'- -ACUGCUGUA---------------GGCGCCuGCGUAG--GUCC- -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 50377 | 0.68 | 0.696142 |
Target: 5'- gGACGugGcCCuucuugcgGUGGGCGCGggaCCAGGa -3' miRNA: 3'- aCUGCugUaGG--------CGCCUGCGUa--GGUCC- -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 13244 | 0.69 | 0.611636 |
Target: 5'- -cGCGACcgCCGCGucaagcucgccGAauucCGCGUCCAGGc -3' miRNA: 3'- acUGCUGuaGGCGC-----------CU----GCGUAGGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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