miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18417 5' -55.8 NC_004681.1 + 23883 1.1 0.001398
Target:  5'- uUGACGACAUCCGCGGACGCAUCCAGGc -3'
miRNA:   3'- -ACUGCUGUAGGCGCCUGCGUAGGUCC- -5'
18417 5' -55.8 NC_004681.1 + 49343 0.76 0.258053
Target:  5'- cGGCGGCG-CCGCGGGCGCugaCCAcuGGg -3'
miRNA:   3'- aCUGCUGUaGGCGCCUGCGua-GGU--CC- -5'
18417 5' -55.8 NC_004681.1 + 30751 0.74 0.344182
Target:  5'- -cGCGGCGUCCGCGGGaaucuCGC-UCCAGu -3'
miRNA:   3'- acUGCUGUAGGCGCCU-----GCGuAGGUCc -5'
18417 5' -55.8 NC_004681.1 + 5296 0.73 0.394408
Target:  5'- gUGGCGACAgcucggCCaugGCGGGCGCGgaCAGGg -3'
miRNA:   3'- -ACUGCUGUa-----GG---CGCCUGCGUagGUCC- -5'
18417 5' -55.8 NC_004681.1 + 32220 0.72 0.468298
Target:  5'- cGugGGCcgCCGCGGugacCGCuUCCuGGa -3'
miRNA:   3'- aCugCUGuaGGCGCCu---GCGuAGGuCC- -5'
18417 5' -55.8 NC_004681.1 + 51409 0.72 0.468298
Target:  5'- gUGAUGACGUCgGCGGACuCA-CCGGc -3'
miRNA:   3'- -ACUGCUGUAGgCGCCUGcGUaGGUCc -5'
18417 5' -55.8 NC_004681.1 + 23834 0.71 0.487867
Target:  5'- cGACGACuUCCuCGGGCaGCGUCUcGGa -3'
miRNA:   3'- aCUGCUGuAGGcGCCUG-CGUAGGuCC- -5'
18417 5' -55.8 NC_004681.1 + 16885 0.71 0.507812
Target:  5'- ---gGGCAUgCCGgGGAUGCcgCCAGGc -3'
miRNA:   3'- acugCUGUA-GGCgCCUGCGuaGGUCC- -5'
18417 5' -55.8 NC_004681.1 + 50059 0.71 0.5169
Target:  5'- cGACGcCAUCgacugccUGCGGGuCGaCGUCCAGGa -3'
miRNA:   3'- aCUGCuGUAG-------GCGCCU-GC-GUAGGUCC- -5'
18417 5' -55.8 NC_004681.1 + 63790 0.71 0.517914
Target:  5'- aUGACGA-GUCCGCGG-CGCAccacuUgCAGGu -3'
miRNA:   3'- -ACUGCUgUAGGCGCCuGCGU-----AgGUCC- -5'
18417 5' -55.8 NC_004681.1 + 10761 0.7 0.558011
Target:  5'- -cGCGACggCCGCGGGCaccggggGCG-CCAGGc -3'
miRNA:   3'- acUGCUGuaGGCGCCUG-------CGUaGGUCC- -5'
18417 5' -55.8 NC_004681.1 + 23981 0.7 0.569489
Target:  5'- gGAUG-CGUCCGCGGAUGuCGUCaaucguguccguCAGGc -3'
miRNA:   3'- aCUGCuGUAGGCGCCUGC-GUAG------------GUCC- -5'
18417 5' -55.8 NC_004681.1 + 59195 0.7 0.590498
Target:  5'- gGACGGCcUCC-CGGGCGgcuCGUCCAGc -3'
miRNA:   3'- aCUGCUGuAGGcGCCUGC---GUAGGUCc -5'
18417 5' -55.8 NC_004681.1 + 13244 0.69 0.611636
Target:  5'- -cGCGACcgCCGCGucaagcucgccGAauucCGCGUCCAGGc -3'
miRNA:   3'- acUGCUGuaGGCGC-----------CU----GCGUAGGUCC- -5'
18417 5' -55.8 NC_004681.1 + 42355 0.69 0.611636
Target:  5'- aGGCGcCuUCCGCGGGCGgGaCCAGc -3'
miRNA:   3'- aCUGCuGuAGGCGCCUGCgUaGGUCc -5'
18417 5' -55.8 NC_004681.1 + 61824 0.69 0.611636
Target:  5'- gGGCGGCcUCCuuGCGGACGgAcUCCAGc -3'
miRNA:   3'- aCUGCUGuAGG--CGCCUGCgU-AGGUCc -5'
18417 5' -55.8 NC_004681.1 + 30739 0.69 0.622234
Target:  5'- cGACGGCAugcucaucgagUCCGCGGGC---UCCAaGGg -3'
miRNA:   3'- aCUGCUGU-----------AGGCGCCUGcguAGGU-CC- -5'
18417 5' -55.8 NC_004681.1 + 50527 0.69 0.63284
Target:  5'- aGACGAgGuucUCCGCGGugGUccugggguUCCAGu -3'
miRNA:   3'- aCUGCUgU---AGGCGCCugCGu-------AGGUCc -5'
18417 5' -55.8 NC_004681.1 + 33295 0.68 0.652983
Target:  5'- cGACGcCGgucgcgCCGCGGuguACGCcgggacguucgccGUCCAGGg -3'
miRNA:   3'- aCUGCuGUa-----GGCGCC---UGCG-------------UAGGUCC- -5'
18417 5' -55.8 NC_004681.1 + 18492 0.68 0.654042
Target:  5'- aGGCGuuuGCcgCCGCGGcCGCcgCCuGGc -3'
miRNA:   3'- aCUGC---UGuaGGCGCCuGCGuaGGuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.