miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18417 5' -55.8 NC_004681.1 + 62641 0.66 0.775958
Target:  5'- gGAUGACA-CCGagguagacgguguCGGAgGCGgcugCCAGGg -3'
miRNA:   3'- aCUGCUGUaGGC-------------GCCUgCGUa---GGUCC- -5'
18417 5' -55.8 NC_004681.1 + 42619 0.67 0.767207
Target:  5'- aGugGAUG-CCGgGGGCGCAUuccugCCAGcGg -3'
miRNA:   3'- aCugCUGUaGGCgCCUGCGUA-----GGUC-C- -5'
18417 5' -55.8 NC_004681.1 + 30946 0.67 0.767207
Target:  5'- gGGCGGCGUgCCGUccuccacGAUGgGUCCGGGc -3'
miRNA:   3'- aCUGCUGUA-GGCGc------CUGCgUAGGUCC- -5'
18417 5' -55.8 NC_004681.1 + 50146 0.67 0.755376
Target:  5'- cGGCGGCAucUCCGUccaagucGGcaaaugaGCGaCGUCCAGGu -3'
miRNA:   3'- aCUGCUGU--AGGCG-------CC-------UGC-GUAGGUCC- -5'
18417 5' -55.8 NC_004681.1 + 18391 0.67 0.753388
Target:  5'- aGGCGGCggCCGCGGcggcaaacgccuuCGCAcCCGGa -3'
miRNA:   3'- aCUGCUGuaGGCGCCu------------GCGUaGGUCc -5'
18417 5' -55.8 NC_004681.1 + 74043 0.67 0.747394
Target:  5'- cUGAgGACuugcUCgCGCGGAUGC-UCCGuGGa -3'
miRNA:   3'- -ACUgCUGu---AG-GCGCCUGCGuAGGU-CC- -5'
18417 5' -55.8 NC_004681.1 + 26320 0.67 0.73732
Target:  5'- gGGCgGGCAUcgCCGCcGugGCGggCCAGGa -3'
miRNA:   3'- aCUG-CUGUA--GGCGcCugCGUa-GGUCC- -5'
18417 5' -55.8 NC_004681.1 + 66226 0.67 0.73732
Target:  5'- -uGCGACGUCgCGCGGcaaGCGCAUgaagcacaCCAcGGa -3'
miRNA:   3'- acUGCUGUAG-GCGCC---UGCGUA--------GGU-CC- -5'
18417 5' -55.8 NC_004681.1 + 40464 0.67 0.73732
Target:  5'- cGAUGACAUugaacgCCGCGGccgACGCcgCCAc- -3'
miRNA:   3'- aCUGCUGUA------GGCGCC---UGCGuaGGUcc -5'
18417 5' -55.8 NC_004681.1 + 33398 0.67 0.73732
Target:  5'- cGGCGuACA-CCGCGG-CGCGaCCGGc -3'
miRNA:   3'- aCUGC-UGUaGGCGCCuGCGUaGGUCc -5'
18417 5' -55.8 NC_004681.1 + 32767 0.67 0.731228
Target:  5'- cGGuCGGCAaUCCGCuGGGcCGCucguaccaggaguccGUCCAGGa -3'
miRNA:   3'- aCU-GCUGU-AGGCG-CCU-GCG---------------UAGGUCC- -5'
18417 5' -55.8 NC_004681.1 + 28612 0.67 0.727148
Target:  5'- cGugGAgAUgaCCGCGGGgGUGcCCGGGg -3'
miRNA:   3'- aCugCUgUA--GGCGCCUgCGUaGGUCC- -5'
18417 5' -55.8 NC_004681.1 + 8383 0.67 0.727148
Target:  5'- uUGGCGGCGUCCGCGccaccGAgGCucUUCAGc -3'
miRNA:   3'- -ACUGCUGUAGGCGC-----CUgCGu-AGGUCc -5'
18417 5' -55.8 NC_004681.1 + 15373 0.67 0.716887
Target:  5'- ---aGGCGUUCGCcGACGCcAUCCAGa -3'
miRNA:   3'- acugCUGUAGGCGcCUGCG-UAGGUCc -5'
18417 5' -55.8 NC_004681.1 + 50377 0.68 0.696142
Target:  5'- gGACGugGcCCuucuugcgGUGGGCGCGggaCCAGGa -3'
miRNA:   3'- aCUGCugUaGG--------CGCCUGCGUa--GGUCC- -5'
18417 5' -55.8 NC_004681.1 + 47496 0.68 0.689871
Target:  5'- uUGACGACGUcgcaggaccgcgucgCCGUGG-CGCGUUggCGGGc -3'
miRNA:   3'- -ACUGCUGUA---------------GGCGCCuGCGUAG--GUCC- -5'
18417 5' -55.8 NC_004681.1 + 18492 0.68 0.654042
Target:  5'- aGGCGuuuGCcgCCGCGGcCGCcgCCuGGc -3'
miRNA:   3'- aCUGC---UGuaGGCGCCuGCGuaGGuCC- -5'
18417 5' -55.8 NC_004681.1 + 2923 0.68 0.654042
Target:  5'- -aGCGGCGguccCCGCGGGCuccguagguuuGCGUCCGGu -3'
miRNA:   3'- acUGCUGUa---GGCGCCUG-----------CGUAGGUCc -5'
18417 5' -55.8 NC_004681.1 + 33295 0.68 0.652983
Target:  5'- cGACGcCGgucgcgCCGCGGuguACGCcgggacguucgccGUCCAGGg -3'
miRNA:   3'- aCUGCuGUa-----GGCGCC---UGCG-------------UAGGUCC- -5'
18417 5' -55.8 NC_004681.1 + 50527 0.69 0.63284
Target:  5'- aGACGAgGuucUCCGCGGugGUccugggguUCCAGu -3'
miRNA:   3'- aCUGCUgU---AGGCGCCugCGu-------AGGUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.