miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18417 5' -55.8 NC_004681.1 + 2142 0.66 0.786503
Target:  5'- gUGAgGAUGUCCGCGG-UGCggCCGc- -3'
miRNA:   3'- -ACUgCUGUAGGCGCCuGCGuaGGUcc -5'
18417 5' -55.8 NC_004681.1 + 2923 0.68 0.654042
Target:  5'- -aGCGGCGguccCCGCGGGCuccguagguuuGCGUCCGGu -3'
miRNA:   3'- acUGCUGUa---GGCGCCUG-----------CGUAGGUCc -5'
18417 5' -55.8 NC_004681.1 + 5296 0.73 0.394408
Target:  5'- gUGGCGACAgcucggCCaugGCGGGCGCGgaCAGGg -3'
miRNA:   3'- -ACUGCUGUa-----GG---CGCCUGCGUagGUCC- -5'
18417 5' -55.8 NC_004681.1 + 7696 0.66 0.776924
Target:  5'- cGGCGAag-UCGCGGGCGUAggugCCAu- -3'
miRNA:   3'- aCUGCUguaGGCGCCUGCGUa---GGUcc -5'
18417 5' -55.8 NC_004681.1 + 8383 0.67 0.727148
Target:  5'- uUGGCGGCGUCCGCGccaccGAgGCucUUCAGc -3'
miRNA:   3'- -ACUGCUGUAGGCGC-----CUgCGu-AGGUCc -5'
18417 5' -55.8 NC_004681.1 + 8715 0.66 0.814305
Target:  5'- -aACG-CcgCCGCGGuCGCugaagCCGGGa -3'
miRNA:   3'- acUGCuGuaGGCGCCuGCGua---GGUCC- -5'
18417 5' -55.8 NC_004681.1 + 8819 0.66 0.814305
Target:  5'- cGAUGAagGUCUGCGcGACGCAcCCGa- -3'
miRNA:   3'- aCUGCUg-UAGGCGC-CUGCGUaGGUcc -5'
18417 5' -55.8 NC_004681.1 + 10761 0.7 0.558011
Target:  5'- -cGCGACggCCGCGGGCaccggggGCG-CCAGGc -3'
miRNA:   3'- acUGCUGuaGGCGCCUG-------CGUaGGUCC- -5'
18417 5' -55.8 NC_004681.1 + 12490 0.66 0.814305
Target:  5'- cGACGAgCGUcgCCGCGGugGUGgugCCAc- -3'
miRNA:   3'- aCUGCU-GUA--GGCGCCugCGUa--GGUcc -5'
18417 5' -55.8 NC_004681.1 + 13118 0.66 0.795932
Target:  5'- cGAUGACAgugucagUCGCGGccACGuCGUCCGcGGu -3'
miRNA:   3'- aCUGCUGUa------GGCGCC--UGC-GUAGGU-CC- -5'
18417 5' -55.8 NC_004681.1 + 13244 0.69 0.611636
Target:  5'- -cGCGACcgCCGCGucaagcucgccGAauucCGCGUCCAGGc -3'
miRNA:   3'- acUGCUGuaGGCGC-----------CU----GCGUAGGUCC- -5'
18417 5' -55.8 NC_004681.1 + 13988 0.66 0.814305
Target:  5'- gUGGCGGCcUgUGCGuACuCAUCCGGGg -3'
miRNA:   3'- -ACUGCUGuAgGCGCcUGcGUAGGUCC- -5'
18417 5' -55.8 NC_004681.1 + 14771 0.66 0.813402
Target:  5'- --gUGACG-CCGCGGACGCccuggccAUCCugaAGGc -3'
miRNA:   3'- acuGCUGUaGGCGCCUGCG-------UAGG---UCC- -5'
18417 5' -55.8 NC_004681.1 + 15179 0.66 0.795932
Target:  5'- cGACGACugGUCaGCaGACGCAcccgUCUGGGu -3'
miRNA:   3'- aCUGCUG--UAGgCGcCUGCGU----AGGUCC- -5'
18417 5' -55.8 NC_004681.1 + 15373 0.67 0.716887
Target:  5'- ---aGGCGUUCGCcGACGCcAUCCAGa -3'
miRNA:   3'- acugCUGUAGGCGcCUGCG-UAGGUCc -5'
18417 5' -55.8 NC_004681.1 + 15906 0.66 0.776924
Target:  5'- gUGAaGAUcgCCGUGGcCGCGgucaagaccaUCCAGGc -3'
miRNA:   3'- -ACUgCUGuaGGCGCCuGCGU----------AGGUCC- -5'
18417 5' -55.8 NC_004681.1 + 16788 0.66 0.814305
Target:  5'- cUGGCGGCAUCCcCGGcAUGC--CCgAGGa -3'
miRNA:   3'- -ACUGCUGUAGGcGCC-UGCGuaGG-UCC- -5'
18417 5' -55.8 NC_004681.1 + 16885 0.71 0.507812
Target:  5'- ---gGGCAUgCCGgGGAUGCcgCCAGGc -3'
miRNA:   3'- acugCUGUA-GGCgCCUGCGuaGGUCC- -5'
18417 5' -55.8 NC_004681.1 + 18391 0.67 0.753388
Target:  5'- aGGCGGCggCCGCGGcggcaaacgccuuCGCAcCCGGa -3'
miRNA:   3'- aCUGCUGuaGGCGCCu------------GCGUaGGUCc -5'
18417 5' -55.8 NC_004681.1 + 18492 0.68 0.654042
Target:  5'- aGGCGuuuGCcgCCGCGGcCGCcgCCuGGc -3'
miRNA:   3'- aCUGC---UGuaGGCGCCuGCGuaGGuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.