miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18417 5' -55.8 NC_004681.1 + 23615 0.66 0.805203
Target:  5'- cGAUGACGUCCuGCGGGuuggUGCcgCUGGu -3'
miRNA:   3'- aCUGCUGUAGG-CGCCU----GCGuaGGUCc -5'
18417 5' -55.8 NC_004681.1 + 23834 0.71 0.487867
Target:  5'- cGACGACuUCCuCGGGCaGCGUCUcGGa -3'
miRNA:   3'- aCUGCUGuAGGcGCCUG-CGUAGGuCC- -5'
18417 5' -55.8 NC_004681.1 + 23883 1.1 0.001398
Target:  5'- uUGACGACAUCCGCGGACGCAUCCAGGc -3'
miRNA:   3'- -ACUGCUGUAGGCGCCUGCGUAGGUCC- -5'
18417 5' -55.8 NC_004681.1 + 23981 0.7 0.569489
Target:  5'- gGAUG-CGUCCGCGGAUGuCGUCaaucguguccguCAGGc -3'
miRNA:   3'- aCUGCuGUAGGCGCCUGC-GUAG------------GUCC- -5'
18417 5' -55.8 NC_004681.1 + 26320 0.67 0.73732
Target:  5'- gGGCgGGCAUcgCCGCcGugGCGggCCAGGa -3'
miRNA:   3'- aCUG-CUGUA--GGCGcCugCGUa-GGUCC- -5'
18417 5' -55.8 NC_004681.1 + 28612 0.67 0.727148
Target:  5'- cGugGAgAUgaCCGCGGGgGUGcCCGGGg -3'
miRNA:   3'- aCugCUgUA--GGCGCCUgCGUaGGUCC- -5'
18417 5' -55.8 NC_004681.1 + 30739 0.69 0.622234
Target:  5'- cGACGGCAugcucaucgagUCCGCGGGC---UCCAaGGg -3'
miRNA:   3'- aCUGCUGU-----------AGGCGCCUGcguAGGU-CC- -5'
18417 5' -55.8 NC_004681.1 + 30751 0.74 0.344182
Target:  5'- -cGCGGCGUCCGCGGGaaucuCGC-UCCAGu -3'
miRNA:   3'- acUGCUGUAGGCGCCU-----GCGuAGGUCc -5'
18417 5' -55.8 NC_004681.1 + 30946 0.67 0.767207
Target:  5'- gGGCGGCGUgCCGUccuccacGAUGgGUCCGGGc -3'
miRNA:   3'- aCUGCUGUA-GGCGc------CUGCgUAGGUCC- -5'
18417 5' -55.8 NC_004681.1 + 32220 0.72 0.468298
Target:  5'- cGugGGCcgCCGCGGugacCGCuUCCuGGa -3'
miRNA:   3'- aCugCUGuaGGCGCCu---GCGuAGGuCC- -5'
18417 5' -55.8 NC_004681.1 + 32445 0.66 0.785551
Target:  5'- cGugGGCAUCgcugagcagaucgCGUGGACGCAcaucuUCUcGGa -3'
miRNA:   3'- aCugCUGUAG-------------GCGCCUGCGU-----AGGuCC- -5'
18417 5' -55.8 NC_004681.1 + 32487 0.66 0.814305
Target:  5'- nGAUGGCGUgaagcgcgaCGCGGGCGaCGUCCuGa -3'
miRNA:   3'- aCUGCUGUAg--------GCGCCUGC-GUAGGuCc -5'
18417 5' -55.8 NC_004681.1 + 32767 0.67 0.731228
Target:  5'- cGGuCGGCAaUCCGCuGGGcCGCucguaccaggaguccGUCCAGGa -3'
miRNA:   3'- aCU-GCUGU-AGGCG-CCU-GCG---------------UAGGUCC- -5'
18417 5' -55.8 NC_004681.1 + 33295 0.68 0.652983
Target:  5'- cGACGcCGgucgcgCCGCGGuguACGCcgggacguucgccGUCCAGGg -3'
miRNA:   3'- aCUGCuGUa-----GGCGCC---UGCG-------------UAGGUCC- -5'
18417 5' -55.8 NC_004681.1 + 33398 0.67 0.73732
Target:  5'- cGGCGuACA-CCGCGG-CGCGaCCGGc -3'
miRNA:   3'- aCUGC-UGUaGGCGCCuGCGUaGGUCc -5'
18417 5' -55.8 NC_004681.1 + 37533 0.66 0.813402
Target:  5'- cGAUGACAcCCuugaugugGUGGAUGUccuugaaGUCCGGGg -3'
miRNA:   3'- aCUGCUGUaGG--------CGCCUGCG-------UAGGUCC- -5'
18417 5' -55.8 NC_004681.1 + 40464 0.67 0.73732
Target:  5'- cGAUGACAUugaacgCCGCGGccgACGCcgCCAc- -3'
miRNA:   3'- aCUGCUGUA------GGCGCC---UGCGuaGGUcc -5'
18417 5' -55.8 NC_004681.1 + 42355 0.69 0.611636
Target:  5'- aGGCGcCuUCCGCGGGCGgGaCCAGc -3'
miRNA:   3'- aCUGCuGuAGGCGCCUGCgUaGGUCc -5'
18417 5' -55.8 NC_004681.1 + 42619 0.67 0.767207
Target:  5'- aGugGAUG-CCGgGGGCGCAUuccugCCAGcGg -3'
miRNA:   3'- aCugCUGUaGGCgCCUGCGUA-----GGUC-C- -5'
18417 5' -55.8 NC_004681.1 + 47496 0.68 0.689871
Target:  5'- uUGACGACGUcgcaggaccgcgucgCCGUGG-CGCGUUggCGGGc -3'
miRNA:   3'- -ACUGCUGUA---------------GGCGCCuGCGUAG--GUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.