Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18417 | 5' | -55.8 | NC_004681.1 | + | 74835 | 0.66 | 0.786503 |
Target: 5'- gGAgGACAcCCGCggccGGAUGC-UCCAGu -3' miRNA: 3'- aCUgCUGUaGGCG----CCUGCGuAGGUCc -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 74043 | 0.67 | 0.747394 |
Target: 5'- cUGAgGACuugcUCgCGCGGAUGC-UCCGuGGa -3' miRNA: 3'- -ACUgCUGu---AG-GCGCCUGCGuAGGU-CC- -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 66226 | 0.67 | 0.73732 |
Target: 5'- -uGCGACGUCgCGCGGcaaGCGCAUgaagcacaCCAcGGa -3' miRNA: 3'- acUGCUGUAG-GCGCC---UGCGUA--------GGU-CC- -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 63790 | 0.71 | 0.517914 |
Target: 5'- aUGACGA-GUCCGCGG-CGCAccacuUgCAGGu -3' miRNA: 3'- -ACUGCUgUAGGCGCCuGCGU-----AgGUCC- -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 62641 | 0.66 | 0.775958 |
Target: 5'- gGAUGACA-CCGagguagacgguguCGGAgGCGgcugCCAGGg -3' miRNA: 3'- aCUGCUGUaGGC-------------GCCUgCGUa---GGUCC- -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 62087 | 0.66 | 0.795932 |
Target: 5'- aUGGCGGCcUCCaUGGGCgGCAUCCu-- -3' miRNA: 3'- -ACUGCUGuAGGcGCCUG-CGUAGGucc -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 61824 | 0.69 | 0.611636 |
Target: 5'- gGGCGGCcUCCuuGCGGACGgAcUCCAGc -3' miRNA: 3'- aCUGCUGuAGG--CGCCUGCgU-AGGUCc -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 61764 | 0.66 | 0.775958 |
Target: 5'- cGGCGGCcUCCGCGGcggcggcuucugcGCGCAgCUuGGc -3' miRNA: 3'- aCUGCUGuAGGCGCC-------------UGCGUaGGuCC- -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 59195 | 0.7 | 0.590498 |
Target: 5'- gGACGGCcUCC-CGGGCGgcuCGUCCAGc -3' miRNA: 3'- aCUGCUGuAGGcGCCUGC---GUAGGUCc -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 53740 | 0.66 | 0.776924 |
Target: 5'- aUGACGACA-CCGaccaGGGCGCcgUCGu- -3' miRNA: 3'- -ACUGCUGUaGGCg---CCUGCGuaGGUcc -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 51409 | 0.72 | 0.468298 |
Target: 5'- gUGAUGACGUCgGCGGACuCA-CCGGc -3' miRNA: 3'- -ACUGCUGUAGgCGCCUGcGUaGGUCc -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 50527 | 0.69 | 0.63284 |
Target: 5'- aGACGAgGuucUCCGCGGugGUccugggguUCCAGu -3' miRNA: 3'- aCUGCUgU---AGGCGCCugCGu-------AGGUCc -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 50377 | 0.68 | 0.696142 |
Target: 5'- gGACGugGcCCuucuugcgGUGGGCGCGggaCCAGGa -3' miRNA: 3'- aCUGCugUaGG--------CGCCUGCGUa--GGUCC- -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 50146 | 0.67 | 0.755376 |
Target: 5'- cGGCGGCAucUCCGUccaagucGGcaaaugaGCGaCGUCCAGGu -3' miRNA: 3'- aCUGCUGU--AGGCG-------CC-------UGC-GUAGGUCC- -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 50059 | 0.71 | 0.5169 |
Target: 5'- cGACGcCAUCgacugccUGCGGGuCGaCGUCCAGGa -3' miRNA: 3'- aCUGCuGUAG-------GCGCCU-GC-GUAGGUCC- -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 49343 | 0.76 | 0.258053 |
Target: 5'- cGGCGGCG-CCGCGGGCGCugaCCAcuGGg -3' miRNA: 3'- aCUGCUGUaGGCGCCUGCGua-GGU--CC- -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 47548 | 0.66 | 0.805203 |
Target: 5'- cUGAUGGCAcUCGUGGAgguugaGCAUCCAc- -3' miRNA: 3'- -ACUGCUGUaGGCGCCUg-----CGUAGGUcc -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 47496 | 0.68 | 0.689871 |
Target: 5'- uUGACGACGUcgcaggaccgcgucgCCGUGG-CGCGUUggCGGGc -3' miRNA: 3'- -ACUGCUGUA---------------GGCGCCuGCGUAG--GUCC- -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 42619 | 0.67 | 0.767207 |
Target: 5'- aGugGAUG-CCGgGGGCGCAUuccugCCAGcGg -3' miRNA: 3'- aCugCUGUaGGCgCCUGCGUA-----GGUC-C- -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 42355 | 0.69 | 0.611636 |
Target: 5'- aGGCGcCuUCCGCGGGCGgGaCCAGc -3' miRNA: 3'- aCUGCuGuAGGCGCCUGCgUaGGUCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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