miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18417 5' -55.8 NC_004681.1 + 32487 0.66 0.814305
Target:  5'- nGAUGGCGUgaagcgcgaCGCGGGCGaCGUCCuGa -3'
miRNA:   3'- aCUGCUGUAg--------GCGCCUGC-GUAGGuCc -5'
18417 5' -55.8 NC_004681.1 + 50146 0.67 0.755376
Target:  5'- cGGCGGCAucUCCGUccaagucGGcaaaugaGCGaCGUCCAGGu -3'
miRNA:   3'- aCUGCUGU--AGGCG-------CC-------UGC-GUAGGUCC- -5'
18417 5' -55.8 NC_004681.1 + 15906 0.66 0.776924
Target:  5'- gUGAaGAUcgCCGUGGcCGCGgucaagaccaUCCAGGc -3'
miRNA:   3'- -ACUgCUGuaGGCGCCuGCGU----------AGGUCC- -5'
18417 5' -55.8 NC_004681.1 + 32445 0.66 0.785551
Target:  5'- cGugGGCAUCgcugagcagaucgCGUGGACGCAcaucuUCUcGGa -3'
miRNA:   3'- aCugCUGUAG-------------GCGCCUGCGU-----AGGuCC- -5'
18417 5' -55.8 NC_004681.1 + 62087 0.66 0.795932
Target:  5'- aUGGCGGCcUCCaUGGGCgGCAUCCu-- -3'
miRNA:   3'- -ACUGCUGuAGGcGCCUG-CGUAGGucc -5'
18417 5' -55.8 NC_004681.1 + 37533 0.66 0.813402
Target:  5'- cGAUGACAcCCuugaugugGUGGAUGUccuugaaGUCCGGGg -3'
miRNA:   3'- aCUGCUGUaGG--------CGCCUGCG-------UAGGUCC- -5'
18417 5' -55.8 NC_004681.1 + 14771 0.66 0.813402
Target:  5'- --gUGACG-CCGCGGACGCccuggccAUCCugaAGGc -3'
miRNA:   3'- acuGCUGUaGGCGCCUGCG-------UAGG---UCC- -5'
18417 5' -55.8 NC_004681.1 + 16788 0.66 0.814305
Target:  5'- cUGGCGGCAUCCcCGGcAUGC--CCgAGGa -3'
miRNA:   3'- -ACUGCUGUAGGcGCC-UGCGuaGG-UCC- -5'
18417 5' -55.8 NC_004681.1 + 8715 0.66 0.814305
Target:  5'- -aACG-CcgCCGCGGuCGCugaagCCGGGa -3'
miRNA:   3'- acUGCuGuaGGCGCCuGCGua---GGUCC- -5'
18417 5' -55.8 NC_004681.1 + 18391 0.67 0.753388
Target:  5'- aGGCGGCggCCGCGGcggcaaacgccuuCGCAcCCGGa -3'
miRNA:   3'- aCUGCUGuaGGCGCCu------------GCGUaGGUCc -5'
18417 5' -55.8 NC_004681.1 + 66226 0.67 0.73732
Target:  5'- -uGCGACGUCgCGCGGcaaGCGCAUgaagcacaCCAcGGa -3'
miRNA:   3'- acUGCUGUAG-GCGCC---UGCGUA--------GGU-CC- -5'
18417 5' -55.8 NC_004681.1 + 40464 0.67 0.73732
Target:  5'- cGAUGACAUugaacgCCGCGGccgACGCcgCCAc- -3'
miRNA:   3'- aCUGCUGUA------GGCGCC---UGCGuaGGUcc -5'
18417 5' -55.8 NC_004681.1 + 49343 0.76 0.258053
Target:  5'- cGGCGGCG-CCGCGGGCGCugaCCAcuGGg -3'
miRNA:   3'- aCUGCUGUaGGCGCCUGCGua-GGU--CC- -5'
18417 5' -55.8 NC_004681.1 + 50059 0.71 0.5169
Target:  5'- cGACGcCAUCgacugccUGCGGGuCGaCGUCCAGGa -3'
miRNA:   3'- aCUGCuGUAG-------GCGCCU-GC-GUAGGUCC- -5'
18417 5' -55.8 NC_004681.1 + 59195 0.7 0.590498
Target:  5'- gGACGGCcUCC-CGGGCGgcuCGUCCAGc -3'
miRNA:   3'- aCUGCUGuAGGcGCCUGC---GUAGGUCc -5'
18417 5' -55.8 NC_004681.1 + 13244 0.69 0.611636
Target:  5'- -cGCGACcgCCGCGucaagcucgccGAauucCGCGUCCAGGc -3'
miRNA:   3'- acUGCUGuaGGCGC-----------CU----GCGUAGGUCC- -5'
18417 5' -55.8 NC_004681.1 + 30739 0.69 0.622234
Target:  5'- cGACGGCAugcucaucgagUCCGCGGGC---UCCAaGGg -3'
miRNA:   3'- aCUGCUGU-----------AGGCGCCUGcguAGGU-CC- -5'
18417 5' -55.8 NC_004681.1 + 33295 0.68 0.652983
Target:  5'- cGACGcCGgucgcgCCGCGGuguACGCcgggacguucgccGUCCAGGg -3'
miRNA:   3'- aCUGCuGUa-----GGCGCC---UGCG-------------UAGGUCC- -5'
18417 5' -55.8 NC_004681.1 + 15373 0.67 0.716887
Target:  5'- ---aGGCGUUCGCcGACGCcAUCCAGa -3'
miRNA:   3'- acugCUGUAGGCGcCUGCG-UAGGUCc -5'
18417 5' -55.8 NC_004681.1 + 32767 0.67 0.731228
Target:  5'- cGGuCGGCAaUCCGCuGGGcCGCucguaccaggaguccGUCCAGGa -3'
miRNA:   3'- aCU-GCUGU-AGGCG-CCU-GCG---------------UAGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.