Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18417 | 5' | -55.8 | NC_004681.1 | + | 30751 | 0.74 | 0.344182 |
Target: 5'- -cGCGGCGUCCGCGGGaaucuCGC-UCCAGu -3' miRNA: 3'- acUGCUGUAGGCGCCU-----GCGuAGGUCc -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 28612 | 0.67 | 0.727148 |
Target: 5'- cGugGAgAUgaCCGCGGGgGUGcCCGGGg -3' miRNA: 3'- aCugCUgUA--GGCGCCUgCGUaGGUCC- -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 33398 | 0.67 | 0.73732 |
Target: 5'- cGGCGuACA-CCGCGG-CGCGaCCGGc -3' miRNA: 3'- aCUGC-UGUaGGCGCCuGCGUaGGUCc -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 12490 | 0.66 | 0.814305 |
Target: 5'- cGACGAgCGUcgCCGCGGugGUGgugCCAc- -3' miRNA: 3'- aCUGCU-GUA--GGCGCCugCGUa--GGUcc -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 23834 | 0.71 | 0.487867 |
Target: 5'- cGACGACuUCCuCGGGCaGCGUCUcGGa -3' miRNA: 3'- aCUGCUGuAGGcGCCUG-CGUAGGuCC- -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 16885 | 0.71 | 0.507812 |
Target: 5'- ---gGGCAUgCCGgGGAUGCcgCCAGGc -3' miRNA: 3'- acugCUGUA-GGCgCCUGCGuaGGUCC- -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 10761 | 0.7 | 0.558011 |
Target: 5'- -cGCGACggCCGCGGGCaccggggGCG-CCAGGc -3' miRNA: 3'- acUGCUGuaGGCGCCUG-------CGUaGGUCC- -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 23981 | 0.7 | 0.569489 |
Target: 5'- gGAUG-CGUCCGCGGAUGuCGUCaaucguguccguCAGGc -3' miRNA: 3'- aCUGCuGUAGGCGCCUGC-GUAG------------GUCC- -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 50527 | 0.69 | 0.63284 |
Target: 5'- aGACGAgGuucUCCGCGGugGUccugggguUCCAGu -3' miRNA: 3'- aCUGCUgU---AGGCGCCugCGu-------AGGUCc -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 8383 | 0.67 | 0.727148 |
Target: 5'- uUGGCGGCGUCCGCGccaccGAgGCucUUCAGc -3' miRNA: 3'- -ACUGCUGUAGGCGC-----CUgCGu-AGGUCc -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 2923 | 0.68 | 0.654042 |
Target: 5'- -aGCGGCGguccCCGCGGGCuccguagguuuGCGUCCGGu -3' miRNA: 3'- acUGCUGUa---GGCGCCUG-----------CGUAGGUCc -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 42355 | 0.69 | 0.611636 |
Target: 5'- aGGCGcCuUCCGCGGGCGgGaCCAGc -3' miRNA: 3'- aCUGCuGuAGGCGCCUGCgUaGGUCc -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 5296 | 0.73 | 0.394408 |
Target: 5'- gUGGCGACAgcucggCCaugGCGGGCGCGgaCAGGg -3' miRNA: 3'- -ACUGCUGUa-----GG---CGCCUGCGUagGUCC- -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 47496 | 0.68 | 0.689871 |
Target: 5'- uUGACGACGUcgcaggaccgcgucgCCGUGG-CGCGUUggCGGGc -3' miRNA: 3'- -ACUGCUGUA---------------GGCGCCuGCGUAG--GUCC- -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 51409 | 0.72 | 0.468298 |
Target: 5'- gUGAUGACGUCgGCGGACuCA-CCGGc -3' miRNA: 3'- -ACUGCUGUAGgCGCCUGcGUaGGUCc -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 61824 | 0.69 | 0.611636 |
Target: 5'- gGGCGGCcUCCuuGCGGACGgAcUCCAGc -3' miRNA: 3'- aCUGCUGuAGG--CGCCUGCgU-AGGUCc -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 50377 | 0.68 | 0.696142 |
Target: 5'- gGACGugGcCCuucuugcgGUGGGCGCGggaCCAGGa -3' miRNA: 3'- aCUGCugUaGG--------CGCCUGCGUa--GGUCC- -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 26320 | 0.67 | 0.73732 |
Target: 5'- gGGCgGGCAUcgCCGCcGugGCGggCCAGGa -3' miRNA: 3'- aCUG-CUGUA--GGCGcCugCGUa-GGUCC- -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 32220 | 0.72 | 0.468298 |
Target: 5'- cGugGGCcgCCGCGGugacCGCuUCCuGGa -3' miRNA: 3'- aCugCUGuaGGCGCCu---GCGuAGGuCC- -5' |
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18417 | 5' | -55.8 | NC_004681.1 | + | 63790 | 0.71 | 0.517914 |
Target: 5'- aUGACGA-GUCCGCGG-CGCAccacuUgCAGGu -3' miRNA: 3'- -ACUGCUgUAGGCGCCuGCGU-----AgGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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