miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18418 3' -51.6 NC_004681.1 + 35438 0.71 0.646695
Target:  5'- aGUCCUcCGAGGGCuuuAUCAACCUcauaAGCCAc -3'
miRNA:   3'- -CAGGA-GUUCUUG---UAGUUGGG----UCGGUu -5'
18418 3' -51.6 NC_004681.1 + 18880 0.71 0.635394
Target:  5'- uUCCU-----ACGUCAGCCCAGCCGGu -3'
miRNA:   3'- cAGGAguucuUGUAGUUGGGUCGGUU- -5'
18418 3' -51.6 NC_004681.1 + 14341 0.72 0.612792
Target:  5'- gGUUCUCAGcccGCGUCAGCUCAGCCu- -3'
miRNA:   3'- -CAGGAGUUcu-UGUAGUUGGGUCGGuu -5'
18418 3' -51.6 NC_004681.1 + 25903 0.72 0.579047
Target:  5'- --gCUCAGcGACAUCGACCgGGCCAAc -3'
miRNA:   3'- cagGAGUUcUUGUAGUUGGgUCGGUU- -5'
18418 3' -51.6 NC_004681.1 + 40521 0.72 0.579047
Target:  5'- aGUCCUCGAGGuuGUauuGCCCGGUCAGg -3'
miRNA:   3'- -CAGGAGUUCUugUAgu-UGGGUCGGUU- -5'
18418 3' -51.6 NC_004681.1 + 8146 0.74 0.513027
Target:  5'- aGUCCaUCAAGGACAUCAACgCGGaCGAg -3'
miRNA:   3'- -CAGG-AGUUCUUGUAGUUGgGUCgGUU- -5'
18418 3' -51.6 NC_004681.1 + 68983 0.75 0.430341
Target:  5'- -gCCUCGAuGGCGUCGGCCgCGGCCAGu -3'
miRNA:   3'- caGGAGUUcUUGUAGUUGG-GUCGGUU- -5'
18418 3' -51.6 NC_004681.1 + 73469 0.75 0.410909
Target:  5'- uGUCCUCGAGGACAgugcCAACaCGGCCGu -3'
miRNA:   3'- -CAGGAGUUCUUGUa---GUUGgGUCGGUu -5'
18418 3' -51.6 NC_004681.1 + 23827 0.76 0.392031
Target:  5'- uUCCUCGGGcAGCGUCucgGACCCGGUCAGc -3'
miRNA:   3'- cAGGAGUUC-UUGUAG---UUGGGUCGGUU- -5'
18418 3' -51.6 NC_004681.1 + 39203 0.76 0.373726
Target:  5'- -aCgUCGAGGACGUCAGCCUGGUCGAc -3'
miRNA:   3'- caGgAGUUCUUGUAGUUGGGUCGGUU- -5'
18418 3' -51.6 NC_004681.1 + 32072 0.82 0.165152
Target:  5'- cGUCCUCGAGAAgcUgGACCCGGCCGAc -3'
miRNA:   3'- -CAGGAGUUCUUguAgUUGGGUCGGUU- -5'
18418 3' -51.6 NC_004681.1 + 23985 1.06 0.003988
Target:  5'- cGUCCUCAAGAACAUCAACCCAGCCAAc -3'
miRNA:   3'- -CAGGAGUUCUUGUAGUUGGGUCGGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.