miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18418 5' -57.7 NC_004681.1 + 14642 0.66 0.697967
Target:  5'- --gCGGUgGCGGCgaUGCCGaCCCCGuuGAGg -3'
miRNA:   3'- caaGCCG-CGCCG--AUGGUaGGGGC--UUC- -5'
18418 5' -57.7 NC_004681.1 + 51044 0.66 0.677024
Target:  5'- -cUCGGCGaCGGCgagaguuaugACC-UCCUCGAc- -3'
miRNA:   3'- caAGCCGC-GCCGa---------UGGuAGGGGCUuc -5'
18418 5' -57.7 NC_004681.1 + 40644 0.66 0.677024
Target:  5'- -cUCGGUgaGUGGCU-CCAcUCCCUGAc- -3'
miRNA:   3'- caAGCCG--CGCCGAuGGU-AGGGGCUuc -5'
18418 5' -57.7 NC_004681.1 + 8290 0.66 0.673867
Target:  5'- --gUGGCGCGGacgccgccaaggacgGCCuggacaacgacAUCCCCGAGGu -3'
miRNA:   3'- caaGCCGCGCCga-------------UGG-----------UAGGGGCUUC- -5'
18418 5' -57.7 NC_004681.1 + 68511 0.66 0.672814
Target:  5'- --aUGGCucGCGGCacgccugggcgccaUGCCGgugguucUCCCCGAGGg -3'
miRNA:   3'- caaGCCG--CGCCG--------------AUGGU-------AGGGGCUUC- -5'
18418 5' -57.7 NC_004681.1 + 12097 0.66 0.666489
Target:  5'- aGUUCGGCuugGUGGCcuuguaGCCAgcggugCCCaCGAGGg -3'
miRNA:   3'- -CAAGCCG---CGCCGa-----UGGUa-----GGG-GCUUC- -5'
18418 5' -57.7 NC_004681.1 + 30873 0.66 0.666489
Target:  5'- --aUGGCGCGGCcguuggugACCAggcCCuuGGAGc -3'
miRNA:   3'- caaGCCGCGCCGa-------UGGUa--GGggCUUC- -5'
18418 5' -57.7 NC_004681.1 + 35860 0.66 0.655923
Target:  5'- --aCGGUGuCGGCUggaaguGCCGUuacagCCCCGAAu -3'
miRNA:   3'- caaGCCGC-GCCGA------UGGUA-----GGGGCUUc -5'
18418 5' -57.7 NC_004681.1 + 9590 0.66 0.655923
Target:  5'- cUUCGGCGCgcacGGUgaccuUGCCAUCaaCGAAGu -3'
miRNA:   3'- cAAGCCGCG----CCG-----AUGGUAGggGCUUC- -5'
18418 5' -57.7 NC_004681.1 + 62398 0.66 0.645337
Target:  5'- -gUCGGUGC-GCUuCCAUCCCgCGucGa -3'
miRNA:   3'- caAGCCGCGcCGAuGGUAGGG-GCuuC- -5'
18418 5' -57.7 NC_004681.1 + 62619 0.66 0.645337
Target:  5'- -gUCGGagGCGGCUGCCAgggugCCCaUGGc- -3'
miRNA:   3'- caAGCCg-CGCCGAUGGUa----GGG-GCUuc -5'
18418 5' -57.7 NC_004681.1 + 3030 0.67 0.63474
Target:  5'- -cUCGGCGCGcGUggcggUGCCGUCgCCCa--- -3'
miRNA:   3'- caAGCCGCGC-CG-----AUGGUAG-GGGcuuc -5'
18418 5' -57.7 NC_004681.1 + 62670 0.67 0.613548
Target:  5'- -cUCGGCGCgcucccGGCguuCCAUCuCCUGGAu -3'
miRNA:   3'- caAGCCGCG------CCGau-GGUAG-GGGCUUc -5'
18418 5' -57.7 NC_004681.1 + 2834 0.67 0.602971
Target:  5'- --gCGGgGaccgccgcuacaCGGUcACCGUCCCCGAGGc -3'
miRNA:   3'- caaGCCgC------------GCCGaUGGUAGGGGCUUC- -5'
18418 5' -57.7 NC_004681.1 + 32920 0.67 0.581893
Target:  5'- uGUUCGG-GUcGCUGCgCAUCgCCUGAAGg -3'
miRNA:   3'- -CAAGCCgCGcCGAUG-GUAG-GGGCUUC- -5'
18418 5' -57.7 NC_004681.1 + 13684 0.68 0.560969
Target:  5'- -aUUGGCGUGGCcGCCcgcggCCuuGAAGc -3'
miRNA:   3'- caAGCCGCGCCGaUGGua---GGggCUUC- -5'
18418 5' -57.7 NC_004681.1 + 16780 0.68 0.560969
Target:  5'- -gUCGGUGCcuGGCgg-CAUCCCCGGc- -3'
miRNA:   3'- caAGCCGCG--CCGaugGUAGGGGCUuc -5'
18418 5' -57.7 NC_004681.1 + 64932 0.68 0.51981
Target:  5'- --gCGGCGCaGgUACCAgUCCCaCGggGu -3'
miRNA:   3'- caaGCCGCGcCgAUGGU-AGGG-GCuuC- -5'
18418 5' -57.7 NC_004681.1 + 52208 0.69 0.509701
Target:  5'- --aCGGCcaagaaCGGCcccGCCAUCCCCGAc- -3'
miRNA:   3'- caaGCCGc-----GCCGa--UGGUAGGGGCUuc -5'
18418 5' -57.7 NC_004681.1 + 8609 0.69 0.509701
Target:  5'- ---gGGgGCGGuCUcACCGUCCgCGAAGg -3'
miRNA:   3'- caagCCgCGCC-GA-UGGUAGGgGCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.