miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18419 5' -57.7 NC_004681.1 + 39621 0.66 0.707024
Target:  5'- aCGCCGGGAuug--CCAGCccGCUugGGc -3'
miRNA:   3'- -GCGGCCCUcucaaGGUCG--CGAugCUc -5'
18419 5' -57.7 NC_004681.1 + 32524 0.66 0.707024
Target:  5'- gCGCUGGGuGAGUUCCugguGGcCGCUGg--- -3'
miRNA:   3'- -GCGGCCCuCUCAAGG----UC-GCGAUgcuc -5'
18419 5' -57.7 NC_004681.1 + 18268 0.66 0.686248
Target:  5'- cCGCCaGGGAGAGUaggaccguugauUCCguugGGCGUggggaACGGGc -3'
miRNA:   3'- -GCGG-CCCUCUCA------------AGG----UCGCGa----UGCUC- -5'
18419 5' -57.7 NC_004681.1 + 74928 0.66 0.675783
Target:  5'- aGCCGuuguucuccaGGAGuAGgaCCAGUGCUuccGCGAGc -3'
miRNA:   3'- gCGGC----------CCUC-UCaaGGUCGCGA---UGCUC- -5'
18419 5' -57.7 NC_004681.1 + 9108 0.66 0.675783
Target:  5'- cCGCUGGcucGGGcUCUGGCGUUGCGGGc -3'
miRNA:   3'- -GCGGCCcu-CUCaAGGUCGCGAUGCUC- -5'
18419 5' -57.7 NC_004681.1 + 64268 0.66 0.66528
Target:  5'- cCGCCGaGGAauucGAGcUCCAGUaccucaaggaugGCUACGAc -3'
miRNA:   3'- -GCGGC-CCU----CUCaAGGUCG------------CGAUGCUc -5'
18419 5' -57.7 NC_004681.1 + 5441 0.66 0.66528
Target:  5'- -aCCGGGAGGcGUgCCAGCGCcugUGCGc- -3'
miRNA:   3'- gcGGCCCUCU-CAaGGUCGCG---AUGCuc -5'
18419 5' -57.7 NC_004681.1 + 31235 0.67 0.644198
Target:  5'- gGCUGGGGGA---CCGGCGC--CGAGu -3'
miRNA:   3'- gCGGCCCUCUcaaGGUCGCGauGCUC- -5'
18419 5' -57.7 NC_004681.1 + 13887 0.67 0.644198
Target:  5'- gCGCCGGGAcgacagcuugGGGgcgccgUCCuuGCGCUugGuGa -3'
miRNA:   3'- -GCGGCCCU----------CUCa-----AGGu-CGCGAugCuC- -5'
18419 5' -57.7 NC_004681.1 + 1047 0.67 0.633638
Target:  5'- gCGCCGGuaggucAGGGUgaggUCGGCGuCUugGAGg -3'
miRNA:   3'- -GCGGCCc-----UCUCAa---GGUCGC-GAugCUC- -5'
18419 5' -57.7 NC_004681.1 + 45373 0.67 0.623076
Target:  5'- uCGCCGGucacgggcGGGGcgUCCGGUGCUgccACGAGc -3'
miRNA:   3'- -GCGGCCc-------UCUCa-AGGUCGCGA---UGCUC- -5'
18419 5' -57.7 NC_004681.1 + 73276 0.68 0.570539
Target:  5'- uGCCGGGAggugcgcggcugGAGUgCCAGUaCUGCGGu -3'
miRNA:   3'- gCGGCCCU------------CUCAaGGUCGcGAUGCUc -5'
18419 5' -57.7 NC_004681.1 + 69230 0.69 0.519144
Target:  5'- aGCCGGuaggcGAGGGaggCCAGgGCgcggGCGAGg -3'
miRNA:   3'- gCGGCC-----CUCUCaa-GGUCgCGa---UGCUC- -5'
18419 5' -57.7 NC_004681.1 + 37119 0.7 0.441176
Target:  5'- gGCCGGaaGGAGUgUCAGCGUUGCGGc -3'
miRNA:   3'- gCGGCCc-UCUCAaGGUCGCGAUGCUc -5'
18419 5' -57.7 NC_004681.1 + 1976 0.71 0.413682
Target:  5'- aGCCGGGuGAGcgUCC-GCGaauCUACGGGa -3'
miRNA:   3'- gCGGCCCuCUCa-AGGuCGC---GAUGCUC- -5'
18419 5' -57.7 NC_004681.1 + 58121 0.75 0.235113
Target:  5'- cCGCUaGGGAGGGgaCCGGC-CUACGAGc -3'
miRNA:   3'- -GCGG-CCCUCUCaaGGUCGcGAUGCUC- -5'
18419 5' -57.7 NC_004681.1 + 24475 1.08 0.001145
Target:  5'- gCGCCGGGAGAGUUCCAGCGCUACGAGc -3'
miRNA:   3'- -GCGGCCCUCUCAAGGUCGCGAUGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.