Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1842 | 3' | -54.4 | NC_001347.2 | + | 34035 | 0.66 | 0.98392 |
Target: 5'- aGGACcucuacgcgGCCUUUUGCgagugcggcgACGGGcGCgacaaCGGCGg -3' miRNA: 3'- -CCUG---------CGGAAAAUG----------UGCCC-CGa----GUCGC- -5' |
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1842 | 3' | -54.4 | NC_001347.2 | + | 191733 | 0.66 | 0.97537 |
Target: 5'- cGGcCGUCagcagcgACGCGGGGUgCGGCGc -3' miRNA: 3'- -CCuGCGGaaaa---UGUGCCCCGaGUCGC- -5' |
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1842 | 3' | -54.4 | NC_001347.2 | + | 164310 | 0.66 | 0.977764 |
Target: 5'- uGGACGCCUgggcgcgACGCGGcGuGCUgCuGCu -3' miRNA: 3'- -CCUGCGGAaaa----UGUGCC-C-CGA-GuCGc -5' |
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1842 | 3' | -54.4 | NC_001347.2 | + | 46719 | 0.66 | 0.978673 |
Target: 5'- cGGCGCCUaggUGCACGcugauguccucGGGCUugacgccgguuugcgCAGCGc -3' miRNA: 3'- cCUGCGGAaa-AUGUGC-----------CCCGA---------------GUCGC- -5' |
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1842 | 3' | -54.4 | NC_001347.2 | + | 105260 | 0.66 | 0.979983 |
Target: 5'- cGGCGgCUgcugUUGCACGGG-CUCGGg- -3' miRNA: 3'- cCUGCgGAa---AAUGUGCCCcGAGUCgc -5' |
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1842 | 3' | -54.4 | NC_001347.2 | + | 142140 | 0.66 | 0.98392 |
Target: 5'- cGACGUCggcacaGCGGGGUgcgggcCAGCGa -3' miRNA: 3'- cCUGCGGaaaaugUGCCCCGa-----GUCGC- -5' |
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1842 | 3' | -54.4 | NC_001347.2 | + | 147569 | 0.67 | 0.960527 |
Target: 5'- uGGugGCggUggUGCAgCGGcGGCUgAGCGg -3' miRNA: 3'- -CCugCGgaAa-AUGU-GCC-CCGAgUCGC- -5' |
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1842 | 3' | -54.4 | NC_001347.2 | + | 72196 | 0.67 | 0.960527 |
Target: 5'- -aGCGCCgcgcUGCGCGGcGGCcucaUCGGCa -3' miRNA: 3'- ccUGCGGaaa-AUGUGCC-CCG----AGUCGc -5' |
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1842 | 3' | -54.4 | NC_001347.2 | + | 119873 | 0.67 | 0.960527 |
Target: 5'- cGACGCCUg--ACGCcaGGCUCAGa- -3' miRNA: 3'- cCUGCGGAaaaUGUGccCCGAGUCgc -5' |
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1842 | 3' | -54.4 | NC_001347.2 | + | 78952 | 0.67 | 0.962908 |
Target: 5'- uGACGCCgcaggcucuggugGCGCGuGGGCcCAGCc -3' miRNA: 3'- cCUGCGGaaaa---------UGUGC-CCCGaGUCGc -5' |
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1842 | 3' | -54.4 | NC_001347.2 | + | 193595 | 0.67 | 0.963897 |
Target: 5'- gGGugGCCUga-GCACGccgaGGCcCAGUGg -3' miRNA: 3'- -CCugCGGAaaaUGUGCc---CCGaGUCGC- -5' |
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1842 | 3' | -54.4 | NC_001347.2 | + | 190662 | 0.67 | 0.963897 |
Target: 5'- cGGACGCCUUcgucgcccgugUGC-CGcGGGCgacacgCAGCu -3' miRNA: 3'- -CCUGCGGAAa----------AUGuGC-CCCGa-----GUCGc -5' |
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1842 | 3' | -54.4 | NC_001347.2 | + | 73648 | 0.67 | 0.972792 |
Target: 5'- cGGCGCCgc-UGC-CGGGcCUCGGCc -3' miRNA: 3'- cCUGCGGaaaAUGuGCCCcGAGUCGc -5' |
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1842 | 3' | -54.4 | NC_001347.2 | + | 91217 | 0.67 | 0.972792 |
Target: 5'- -cGCuCCUUUgUugGCGGGGCUCacGGUGg -3' miRNA: 3'- ccUGcGGAAA-AugUGCCCCGAG--UCGC- -5' |
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1842 | 3' | -54.4 | NC_001347.2 | + | 90727 | 0.67 | 0.965188 |
Target: 5'- -aGCGCUUUUguggagGCGCGaGGGCUCuacgugccggccguaAGCGa -3' miRNA: 3'- ccUGCGGAAAa-----UGUGC-CCCGAG---------------UCGC- -5' |
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1842 | 3' | -54.4 | NC_001347.2 | + | 187192 | 0.67 | 0.970024 |
Target: 5'- cGGCGCCg---GCAugccgaggUGGGGCcacugcgaUCAGCGg -3' miRNA: 3'- cCUGCGGaaaaUGU--------GCCCCG--------AGUCGC- -5' |
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1842 | 3' | -54.4 | NC_001347.2 | + | 27976 | 0.68 | 0.940427 |
Target: 5'- -cGCGUgugUUUugACGGGGCUgGGUGg -3' miRNA: 3'- ccUGCGga-AAAugUGCCCCGAgUCGC- -5' |
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1842 | 3' | -54.4 | NC_001347.2 | + | 152512 | 0.69 | 0.930816 |
Target: 5'- cGGGCGCaauuugUACGCGcGGCcgugCAGCGg -3' miRNA: 3'- -CCUGCGgaaa--AUGUGCcCCGa---GUCGC- -5' |
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1842 | 3' | -54.4 | NC_001347.2 | + | 46466 | 0.69 | 0.908848 |
Target: 5'- -aGCGCg---UAUACGGGGCUgGGCa -3' miRNA: 3'- ccUGCGgaaaAUGUGCCCCGAgUCGc -5' |
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1842 | 3' | -54.4 | NC_001347.2 | + | 190946 | 0.69 | 0.92461 |
Target: 5'- gGGGCGCCcggcggccCGCGGGGUUCuacccGGUGg -3' miRNA: 3'- -CCUGCGGaaaau---GUGCCCCGAG-----UCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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