Results 21 - 30 of 30 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 1842 | 3' | -54.4 | NC_001347.2 | + | 190946 | 0.69 | 0.92461 |
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Target: 5'- gGGGCGCCcggcggccCGCGGGGUUCuacccGGUGg -3' miRNA: 3'- -CCUGCGGaaaau---GUGCCCCGAG-----UCGC- -5' |
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| 1842 | 3' | -54.4 | NC_001347.2 | + | 46466 | 0.69 | 0.908848 |
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Target: 5'- -aGCGCg---UAUACGGGGCUgGGCa -3' miRNA: 3'- ccUGCGgaaaAUGUGCCCCGAgUCGc -5' |
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| 1842 | 3' | -54.4 | NC_001347.2 | + | 117503 | 0.7 | 0.896504 |
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Target: 5'- gGGGCGCCguaggACGCGGgauaagacGGCaaaggCAGCGg -3' miRNA: 3'- -CCUGCGGaaaa-UGUGCC--------CCGa----GUCGC- -5' |
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| 1842 | 3' | -54.4 | NC_001347.2 | + | 38103 | 0.7 | 0.87634 |
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Target: 5'- cGGAUgagcgGCCgcg-GCGC-GGGCUCGGCGu -3' miRNA: 3'- -CCUG-----CGGaaaaUGUGcCCCGAGUCGC- -5' |
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| 1842 | 3' | -54.4 | NC_001347.2 | + | 54171 | 0.71 | 0.854297 |
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Target: 5'- cGGGCGCCUUUUucuuCGCcucGGGCUCuGUc -3' miRNA: 3'- -CCUGCGGAAAAu---GUGc--CCCGAGuCGc -5' |
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| 1842 | 3' | -54.4 | NC_001347.2 | + | 93992 | 0.72 | 0.796435 |
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Target: 5'- -cAUGCCcg--GCACGGGGCUC-GCGc -3' miRNA: 3'- ccUGCGGaaaaUGUGCCCCGAGuCGC- -5' |
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| 1842 | 3' | -54.4 | NC_001347.2 | + | 228347 | 0.72 | 0.787539 |
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Target: 5'- cGGugGCUgggcUGCgcgGCGGGGC-CGGCGa -3' miRNA: 3'- -CCugCGGaaa-AUG---UGCCCCGaGUCGC- -5' |
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| 1842 | 3' | -54.4 | NC_001347.2 | + | 96813 | 0.72 | 0.778508 |
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Target: 5'- cGGACGCCggcUACGucccagucCGGGGCUUagAGCa -3' miRNA: 3'- -CCUGCGGaaaAUGU--------GCCCCGAG--UCGc -5' |
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| 1842 | 3' | -54.4 | NC_001347.2 | + | 154433 | 0.73 | 0.760077 |
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Target: 5'- cGACGUCggc--CGCGGGGCgCAGCGc -3' miRNA: 3'- cCUGCGGaaaauGUGCCCCGaGUCGC- -5' |
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| 1842 | 3' | -54.4 | NC_001347.2 | + | 89962 | 0.75 | 0.662787 |
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Target: 5'- uGGugGgCUgcgcCGCGGGGCUguGCGa -3' miRNA: 3'- -CCugCgGAaaauGUGCCCCGAguCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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