miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1842 5' -57.3 NC_001347.2 + 87288 0.66 0.93252
Target:  5'- cGGCGGCG-GCgGUgguggagGAGGUUGCGCc -3'
miRNA:   3'- -CCGCCGCuCGgCGag-----UUUCAGUGCGa -5'
1842 5' -57.3 NC_001347.2 + 55294 0.66 0.927522
Target:  5'- uGGU-GCGGGCCGUgccggUGGAGUCGCaGCa -3'
miRNA:   3'- -CCGcCGCUCGGCGa----GUUUCAGUG-CGa -5'
1842 5' -57.3 NC_001347.2 + 182022 0.66 0.927522
Target:  5'- gGGC-GCGGGCuCGUUCGuGGcUACGCUg -3'
miRNA:   3'- -CCGcCGCUCG-GCGAGUuUCaGUGCGA- -5'
1842 5' -57.3 NC_001347.2 + 73610 0.66 0.927522
Target:  5'- uGGCGGCGGGUCGUggCGGcuGUguCGUUg -3'
miRNA:   3'- -CCGCCGCUCGGCGa-GUUu-CAguGCGA- -5'
1842 5' -57.3 NC_001347.2 + 30588 0.66 0.922302
Target:  5'- cGcCGGCGAGCC-C-CGAGG-CGCGCc -3'
miRNA:   3'- cC-GCCGCUCGGcGaGUUUCaGUGCGa -5'
1842 5' -57.3 NC_001347.2 + 55506 0.66 0.916859
Target:  5'- cGGCGGCGAcguggGUCGCgaguUCAuguuGG-CGCGCg -3'
miRNA:   3'- -CCGCCGCU-----CGGCG----AGUu---UCaGUGCGa -5'
1842 5' -57.3 NC_001347.2 + 204971 0.66 0.916859
Target:  5'- cGGCuGGCGAcCCGC----AGUCugGCUu -3'
miRNA:   3'- -CCG-CCGCUcGGCGaguuUCAGugCGA- -5'
1842 5' -57.3 NC_001347.2 + 71021 0.66 0.916859
Target:  5'- aGGCGGCGAGgCGaaacuGGUgCugGCg -3'
miRNA:   3'- -CCGCCGCUCgGCgaguuUCA-GugCGa -5'
1842 5' -57.3 NC_001347.2 + 223858 0.66 0.916859
Target:  5'- uGCgGGCuccGGCUGCUCGcAGUUugGCUc -3'
miRNA:   3'- cCG-CCGc--UCGGCGAGUuUCAGugCGA- -5'
1842 5' -57.3 NC_001347.2 + 164293 0.66 0.913486
Target:  5'- cGCGGCGugcuGCUGCUCAAcaccguguucaccguGGUgCACGg- -3'
miRNA:   3'- cCGCCGCu---CGGCGAGUU---------------UCA-GUGCga -5'
1842 5' -57.3 NC_001347.2 + 202605 0.66 0.910615
Target:  5'- cGCGaCGAacugccgGCUGCUCAGAcGUUACGCg -3'
miRNA:   3'- cCGCcGCU-------CGGCGAGUUU-CAGUGCGa -5'
1842 5' -57.3 NC_001347.2 + 132233 0.67 0.905308
Target:  5'- cGGCGGCagcGGCCGCggcuuccaUCAucGUgAUGCa -3'
miRNA:   3'- -CCGCCGc--UCGGCG--------AGUuuCAgUGCGa -5'
1842 5' -57.3 NC_001347.2 + 224082 0.67 0.892885
Target:  5'- cGGCGGCGAaacaaccagcGCCGggUAcuGUgGCGCa -3'
miRNA:   3'- -CCGCCGCU----------CGGCgaGUuuCAgUGCGa -5'
1842 5' -57.3 NC_001347.2 + 91635 0.67 0.892885
Target:  5'- uGGCGGUGAcgcaaaGCCGUccCGAAcaUCACGCUa -3'
miRNA:   3'- -CCGCCGCU------CGGCGa-GUUUc-AGUGCGA- -5'
1842 5' -57.3 NC_001347.2 + 228232 0.67 0.886352
Target:  5'- aGCGG-GAGCCGU--GGGGUC-CGCUg -3'
miRNA:   3'- cCGCCgCUCGGCGagUUUCAGuGCGA- -5'
1842 5' -57.3 NC_001347.2 + 75462 0.67 0.884351
Target:  5'- aGCGGCGcgcacagucgccgcAGuuGUUCAAAGUCGgcCGCc -3'
miRNA:   3'- cCGCCGC--------------UCggCGAGUUUCAGU--GCGa -5'
1842 5' -57.3 NC_001347.2 + 141640 0.67 0.87961
Target:  5'- aGCGGCG-GCCuGCgCAGcuUCGCGCa -3'
miRNA:   3'- cCGCCGCuCGG-CGaGUUucAGUGCGa -5'
1842 5' -57.3 NC_001347.2 + 102456 0.67 0.87961
Target:  5'- cGUGGCGcAGgUGCUCAA--UCACGCc -3'
miRNA:   3'- cCGCCGC-UCgGCGAGUUucAGUGCGa -5'
1842 5' -57.3 NC_001347.2 + 103397 0.67 0.87961
Target:  5'- cGGCuacGGCG-GCCGCaUCGAcGgCACGCa -3'
miRNA:   3'- -CCG---CCGCuCGGCG-AGUUuCaGUGCGa -5'
1842 5' -57.3 NC_001347.2 + 153815 0.67 0.872663
Target:  5'- cGCGGCGu-UCGCggUAAAGUCGCGUg -3'
miRNA:   3'- cCGCCGCucGGCGa-GUUUCAGUGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.