Results 1 - 20 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1842 | 5' | -57.3 | NC_001347.2 | + | 87288 | 0.66 | 0.93252 |
Target: 5'- cGGCGGCG-GCgGUgguggagGAGGUUGCGCc -3' miRNA: 3'- -CCGCCGCuCGgCGag-----UUUCAGUGCGa -5' |
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1842 | 5' | -57.3 | NC_001347.2 | + | 164293 | 0.66 | 0.913486 |
Target: 5'- cGCGGCGugcuGCUGCUCAAcaccguguucaccguGGUgCACGg- -3' miRNA: 3'- cCGCCGCu---CGGCGAGUU---------------UCA-GUGCga -5' |
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1842 | 5' | -57.3 | NC_001347.2 | + | 202605 | 0.66 | 0.910615 |
Target: 5'- cGCGaCGAacugccgGCUGCUCAGAcGUUACGCg -3' miRNA: 3'- cCGCcGCU-------CGGCGAGUUU-CAGUGCGa -5' |
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1842 | 5' | -57.3 | NC_001347.2 | + | 223858 | 0.66 | 0.916859 |
Target: 5'- uGCgGGCuccGGCUGCUCGcAGUUugGCUc -3' miRNA: 3'- cCG-CCGc--UCGGCGAGUuUCAGugCGA- -5' |
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1842 | 5' | -57.3 | NC_001347.2 | + | 71021 | 0.66 | 0.916859 |
Target: 5'- aGGCGGCGAGgCGaaacuGGUgCugGCg -3' miRNA: 3'- -CCGCCGCUCgGCgaguuUCA-GugCGa -5' |
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1842 | 5' | -57.3 | NC_001347.2 | + | 204971 | 0.66 | 0.916859 |
Target: 5'- cGGCuGGCGAcCCGC----AGUCugGCUu -3' miRNA: 3'- -CCG-CCGCUcGGCGaguuUCAGugCGA- -5' |
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1842 | 5' | -57.3 | NC_001347.2 | + | 30588 | 0.66 | 0.922302 |
Target: 5'- cGcCGGCGAGCC-C-CGAGG-CGCGCc -3' miRNA: 3'- cC-GCCGCUCGGcGaGUUUCaGUGCGa -5' |
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1842 | 5' | -57.3 | NC_001347.2 | + | 55506 | 0.66 | 0.916859 |
Target: 5'- cGGCGGCGAcguggGUCGCgaguUCAuguuGG-CGCGCg -3' miRNA: 3'- -CCGCCGCU-----CGGCG----AGUu---UCaGUGCGa -5' |
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1842 | 5' | -57.3 | NC_001347.2 | + | 73610 | 0.66 | 0.927522 |
Target: 5'- uGGCGGCGGGUCGUggCGGcuGUguCGUUg -3' miRNA: 3'- -CCGCCGCUCGGCGa-GUUu-CAguGCGA- -5' |
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1842 | 5' | -57.3 | NC_001347.2 | + | 182022 | 0.66 | 0.927522 |
Target: 5'- gGGC-GCGGGCuCGUUCGuGGcUACGCUg -3' miRNA: 3'- -CCGcCGCUCG-GCGAGUuUCaGUGCGA- -5' |
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1842 | 5' | -57.3 | NC_001347.2 | + | 55294 | 0.66 | 0.927522 |
Target: 5'- uGGU-GCGGGCCGUgccggUGGAGUCGCaGCa -3' miRNA: 3'- -CCGcCGCUCGGCGa----GUUUCAGUG-CGa -5' |
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1842 | 5' | -57.3 | NC_001347.2 | + | 103397 | 0.67 | 0.87961 |
Target: 5'- cGGCuacGGCG-GCCGCaUCGAcGgCACGCa -3' miRNA: 3'- -CCG---CCGCuCGGCG-AGUUuCaGUGCGa -5' |
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1842 | 5' | -57.3 | NC_001347.2 | + | 102456 | 0.67 | 0.87961 |
Target: 5'- cGUGGCGcAGgUGCUCAA--UCACGCc -3' miRNA: 3'- cCGCCGC-UCgGCGAGUUucAGUGCGa -5' |
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1842 | 5' | -57.3 | NC_001347.2 | + | 141640 | 0.67 | 0.87961 |
Target: 5'- aGCGGCG-GCCuGCgCAGcuUCGCGCa -3' miRNA: 3'- cCGCCGCuCGG-CGaGUUucAGUGCGa -5' |
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1842 | 5' | -57.3 | NC_001347.2 | + | 141064 | 0.67 | 0.872663 |
Target: 5'- uGCuGCu-GUCGCUCAAGGUCgACGCg -3' miRNA: 3'- cCGcCGcuCGGCGAGUUUCAG-UGCGa -5' |
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1842 | 5' | -57.3 | NC_001347.2 | + | 75462 | 0.67 | 0.884351 |
Target: 5'- aGCGGCGcgcacagucgccgcAGuuGUUCAAAGUCGgcCGCc -3' miRNA: 3'- cCGCCGC--------------UCggCGAGUUUCAGU--GCGa -5' |
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1842 | 5' | -57.3 | NC_001347.2 | + | 228232 | 0.67 | 0.886352 |
Target: 5'- aGCGG-GAGCCGU--GGGGUC-CGCUg -3' miRNA: 3'- cCGCCgCUCGGCGagUUUCAGuGCGA- -5' |
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1842 | 5' | -57.3 | NC_001347.2 | + | 91635 | 0.67 | 0.892885 |
Target: 5'- uGGCGGUGAcgcaaaGCCGUccCGAAcaUCACGCUa -3' miRNA: 3'- -CCGCCGCU------CGGCGa-GUUUc-AGUGCGA- -5' |
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1842 | 5' | -57.3 | NC_001347.2 | + | 224082 | 0.67 | 0.892885 |
Target: 5'- cGGCGGCGAaacaaccagcGCCGggUAcuGUgGCGCa -3' miRNA: 3'- -CCGCCGCU----------CGGCgaGUuuCAgUGCGa -5' |
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1842 | 5' | -57.3 | NC_001347.2 | + | 153815 | 0.67 | 0.872663 |
Target: 5'- cGCGGCGu-UCGCggUAAAGUCGCGUg -3' miRNA: 3'- cCGCCGCucGGCGa-GUUUCAGUGCGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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