miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1842 5' -57.3 NC_001347.2 + 144009 0.82 0.185024
Target:  5'- cGGCGGCGuGCCGCUgaccCAAAauGUCGCGCa -3'
miRNA:   3'- -CCGCCGCuCGGCGA----GUUU--CAGUGCGa -5'
1842 5' -57.3 NC_001347.2 + 74030 0.79 0.295383
Target:  5'- aGGUGaaCGAGUCGCUCAucGUCACGCUc -3'
miRNA:   3'- -CCGCc-GCUCGGCGAGUuuCAGUGCGA- -5'
1842 5' -57.3 NC_001347.2 + 73324 0.76 0.399454
Target:  5'- uGGUGGCGAGCgCGCUCcGGGcCAuCGCg -3'
miRNA:   3'- -CCGCCGCUCG-GCGAGuUUCaGU-GCGa -5'
1842 5' -57.3 NC_001347.2 + 122134 0.76 0.399454
Target:  5'- aGGCGGCG-GCCGCagAGGG-CGCGCc -3'
miRNA:   3'- -CCGCCGCuCGGCGagUUUCaGUGCGa -5'
1842 5' -57.3 NC_001347.2 + 228554 0.75 0.486769
Target:  5'- cGGCGGUGGGCCgGCaCGAcGGUgGCGCUg -3'
miRNA:   3'- -CCGCCGCUCGG-CGaGUU-UCAgUGCGA- -5'
1842 5' -57.3 NC_001347.2 + 129412 0.74 0.505318
Target:  5'- aGGCGGCGcggcgcagcgccGGCCauuCUCcGGGUCGCGCUg -3'
miRNA:   3'- -CCGCCGC------------UCGGc--GAGuUUCAGUGCGA- -5'
1842 5' -57.3 NC_001347.2 + 30940 0.74 0.524164
Target:  5'- aGGCGGCGGagguGCUGCacgUCAAAGUCuuGCa -3'
miRNA:   3'- -CCGCCGCU----CGGCG---AGUUUCAGugCGa -5'
1842 5' -57.3 NC_001347.2 + 21254 0.73 0.552913
Target:  5'- uGCGGUGAGCCcggguuccGCUCGcgguugcGGUCGCGCa -3'
miRNA:   3'- cCGCCGCUCGG--------CGAGUu------UCAGUGCGa -5'
1842 5' -57.3 NC_001347.2 + 91143 0.73 0.552913
Target:  5'- -aCGGCGGGgUGCUCAcgaAAGUCACGUc -3'
miRNA:   3'- ccGCCGCUCgGCGAGU---UUCAGUGCGa -5'
1842 5' -57.3 NC_001347.2 + 46131 0.73 0.591925
Target:  5'- cGCGGCGAcCCGCaCAGcGGUCugGCUg -3'
miRNA:   3'- cCGCCGCUcGGCGaGUU-UCAGugCGA- -5'
1842 5' -57.3 NC_001347.2 + 90117 0.72 0.621491
Target:  5'- --gGGCGcGCCGCUCAAGGacgaACGCUa -3'
miRNA:   3'- ccgCCGCuCGGCGAGUUUCag--UGCGA- -5'
1842 5' -57.3 NC_001347.2 + 119763 0.72 0.651123
Target:  5'- cGGCGGCGAagaaaaucgGCCGCgaaugGAAG-CGCGCg -3'
miRNA:   3'- -CCGCCGCU---------CGGCGag---UUUCaGUGCGa -5'
1842 5' -57.3 NC_001347.2 + 126672 0.72 0.660983
Target:  5'- --gGGCGAGCacgucaaggUGCUCGAAGUgCGCGCg -3'
miRNA:   3'- ccgCCGCUCG---------GCGAGUUUCA-GUGCGa -5'
1842 5' -57.3 NC_001347.2 + 31901 0.72 0.660983
Target:  5'- uGGCGcGCGGGUCGCgCAAcagcGGaUCGCGCa -3'
miRNA:   3'- -CCGC-CGCUCGGCGaGUU----UC-AGUGCGa -5'
1842 5' -57.3 NC_001347.2 + 30508 0.71 0.680629
Target:  5'- uGGCGGCGccgguGCCGC-CGGucUCGCGCa -3'
miRNA:   3'- -CCGCCGCu----CGGCGaGUUucAGUGCGa -5'
1842 5' -57.3 NC_001347.2 + 70835 0.71 0.680629
Target:  5'- uGCGGCcgcGGCCGCUCGAugacgauGUCgGCGCg -3'
miRNA:   3'- cCGCCGc--UCGGCGAGUUu------CAG-UGCGa -5'
1842 5' -57.3 NC_001347.2 + 66665 0.71 0.700125
Target:  5'- aGCGcCGAGCCGCggCugcccGGGUCGCGCa -3'
miRNA:   3'- cCGCcGCUCGGCGa-Gu----UUCAGUGCGa -5'
1842 5' -57.3 NC_001347.2 + 154314 0.71 0.700125
Target:  5'- uGCGGCGAGUCGCcCAGcgGGUCGgccaGCUc -3'
miRNA:   3'- cCGCCGCUCGGCGaGUU--UCAGUg---CGA- -5'
1842 5' -57.3 NC_001347.2 + 47996 0.71 0.708833
Target:  5'- uGCGGCGucguugccggggcGGCUGCUCcAGGUC-CGCg -3'
miRNA:   3'- cCGCCGC-------------UCGGCGAGuUUCAGuGCGa -5'
1842 5' -57.3 NC_001347.2 + 211683 0.7 0.72895
Target:  5'- aGCGGCcugguGCUGCUCGAcaAGUUugGCg -3'
miRNA:   3'- cCGCCGcu---CGGCGAGUU--UCAGugCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.