miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1842 5' -57.3 NC_001347.2 + 141064 0.67 0.872663
Target:  5'- uGCuGCu-GUCGCUCAAGGUCgACGCg -3'
miRNA:   3'- cCGcCGcuCGGCGAGUUUCAG-UGCGa -5'
1842 5' -57.3 NC_001347.2 + 79497 0.67 0.871957
Target:  5'- gGGUGGCGAGuacccuguggaccCCGCcgacguauaCAgcGUCACGCUa -3'
miRNA:   3'- -CCGCCGCUC-------------GGCGa--------GUuuCAGUGCGA- -5'
1842 5' -57.3 NC_001347.2 + 104098 0.68 0.865515
Target:  5'- cGGCGGCGAGgUGCgCGAAuUCAaGCa -3'
miRNA:   3'- -CCGCCGCUCgGCGaGUUUcAGUgCGa -5'
1842 5' -57.3 NC_001347.2 + 191892 0.68 0.865515
Target:  5'- cGGCGGCcuccgucuccGuGCCGCUCGccG-CugGCg -3'
miRNA:   3'- -CCGCCG----------CuCGGCGAGUuuCaGugCGa -5'
1842 5' -57.3 NC_001347.2 + 227900 0.68 0.850636
Target:  5'- aGuCGGCGcccGCCGC-CGAGGcCGCGCg -3'
miRNA:   3'- cC-GCCGCu--CGGCGaGUUUCaGUGCGa -5'
1842 5' -57.3 NC_001347.2 + 79366 0.68 0.850636
Target:  5'- aGCGGCGuGCCGUgcgCGAAugCAUGCg -3'
miRNA:   3'- cCGCCGCuCGGCGa--GUUUcaGUGCGa -5'
1842 5' -57.3 NC_001347.2 + 68322 0.68 0.849873
Target:  5'- cGGgGGUGGucacguccaguccGCCGCUCAuuuuGUgGCGCg -3'
miRNA:   3'- -CCgCCGCU-------------CGGCGAGUuu--CAgUGCGa -5'
1842 5' -57.3 NC_001347.2 + 72282 0.68 0.842917
Target:  5'- cGGCGGC-AGCUGCggCGguAGGaCACGCg -3'
miRNA:   3'- -CCGCCGcUCGGCGa-GU--UUCaGUGCGa -5'
1842 5' -57.3 NC_001347.2 + 192264 0.68 0.82695
Target:  5'- cGGCGGCGGgcGCCGaCUCGc-GUCccaGCGCc -3'
miRNA:   3'- -CCGCCGCU--CGGC-GAGUuuCAG---UGCGa -5'
1842 5' -57.3 NC_001347.2 + 124321 0.68 0.82695
Target:  5'- cGuCGGCGAGCCGCgCAcgccCGCGCg -3'
miRNA:   3'- cC-GCCGCUCGGCGaGUuucaGUGCGa -5'
1842 5' -57.3 NC_001347.2 + 58171 0.69 0.818715
Target:  5'- uGGCGGUGGGUCcCgacgaCGAGGUgGCGCa -3'
miRNA:   3'- -CCGCCGCUCGGcGa----GUUUCAgUGCGa -5'
1842 5' -57.3 NC_001347.2 + 116633 0.69 0.816213
Target:  5'- aGGcCGGCGuagcuGCCGCUgAGAaacuccaccaccuuGUCugGCUg -3'
miRNA:   3'- -CC-GCCGCu----CGGCGAgUUU--------------CAGugCGA- -5'
1842 5' -57.3 NC_001347.2 + 73478 0.69 0.810323
Target:  5'- aGCGGCGGGCCaggacgUCGGAGggucCGCGCg -3'
miRNA:   3'- cCGCCGCUCGGcg----AGUUUCa---GUGCGa -5'
1842 5' -57.3 NC_001347.2 + 154867 0.69 0.810323
Target:  5'- uGGCGGCGgcAGCgGCgCAGAGcgaacUCACGUc -3'
miRNA:   3'- -CCGCCGC--UCGgCGaGUUUC-----AGUGCGa -5'
1842 5' -57.3 NC_001347.2 + 47508 0.69 0.801779
Target:  5'- aGCGGCuGGGCUGUUCu-GG-CACGCg -3'
miRNA:   3'- cCGCCG-CUCGGCGAGuuUCaGUGCGa -5'
1842 5' -57.3 NC_001347.2 + 227789 0.69 0.801779
Target:  5'- gGGCGcGCGAGCCGCaCGGGcagUugGCUu -3'
miRNA:   3'- -CCGC-CGCUCGGCGaGUUUca-GugCGA- -5'
1842 5' -57.3 NC_001347.2 + 48079 0.69 0.793093
Target:  5'- gGGUGGCGGGCUGCgUCGccuucGGUgACGUc -3'
miRNA:   3'- -CCGCCGCUCGGCG-AGUu----UCAgUGCGa -5'
1842 5' -57.3 NC_001347.2 + 153668 0.7 0.757073
Target:  5'- aGGCGGCGgcugcGGCCGCggCGGAGgccgaagcggccUUGCGCUc -3'
miRNA:   3'- -CCGCCGC-----UCGGCGa-GUUUC------------AGUGCGA- -5'
1842 5' -57.3 NC_001347.2 + 113527 0.7 0.734638
Target:  5'- aGGcCGGaaaGAGCUGCgacagcgugaccgCGGGGUCGCGCg -3'
miRNA:   3'- -CC-GCCg--CUCGGCGa------------GUUUCAGUGCGa -5'
1842 5' -57.3 NC_001347.2 + 211683 0.7 0.72895
Target:  5'- aGCGGCcugguGCUGCUCGAcaAGUUugGCg -3'
miRNA:   3'- cCGCCGcu---CGGCGAGUU--UCAGugCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.