miRNA display CGI


Results 1 - 20 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1842 5' -57.3 NC_001347.2 + 21254 0.73 0.552913
Target:  5'- uGCGGUGAGCCcggguuccGCUCGcgguugcGGUCGCGCa -3'
miRNA:   3'- cCGCCGCUCGG--------CGAGUu------UCAGUGCGa -5'
1842 5' -57.3 NC_001347.2 + 30508 0.71 0.680629
Target:  5'- uGGCGGCGccgguGCCGC-CGGucUCGCGCa -3'
miRNA:   3'- -CCGCCGCu----CGGCGaGUUucAGUGCGa -5'
1842 5' -57.3 NC_001347.2 + 30588 0.66 0.922302
Target:  5'- cGcCGGCGAGCC-C-CGAGG-CGCGCc -3'
miRNA:   3'- cC-GCCGCUCGGcGaGUUUCaGUGCGa -5'
1842 5' -57.3 NC_001347.2 + 30940 0.74 0.524164
Target:  5'- aGGCGGCGGagguGCUGCacgUCAAAGUCuuGCa -3'
miRNA:   3'- -CCGCCGCU----CGGCG---AGUUUCAGugCGa -5'
1842 5' -57.3 NC_001347.2 + 31901 0.72 0.660983
Target:  5'- uGGCGcGCGGGUCGCgCAAcagcGGaUCGCGCa -3'
miRNA:   3'- -CCGC-CGCUCGGCGaGUU----UC-AGUGCGa -5'
1842 5' -57.3 NC_001347.2 + 46131 0.73 0.591925
Target:  5'- cGCGGCGAcCCGCaCAGcGGUCugGCUg -3'
miRNA:   3'- cCGCCGCUcGGCGaGUU-UCAGugCGA- -5'
1842 5' -57.3 NC_001347.2 + 47508 0.69 0.801779
Target:  5'- aGCGGCuGGGCUGUUCu-GG-CACGCg -3'
miRNA:   3'- cCGCCG-CUCGGCGAGuuUCaGUGCGa -5'
1842 5' -57.3 NC_001347.2 + 47996 0.71 0.708833
Target:  5'- uGCGGCGucguugccggggcGGCUGCUCcAGGUC-CGCg -3'
miRNA:   3'- cCGCCGC-------------UCGGCGAGuUUCAGuGCGa -5'
1842 5' -57.3 NC_001347.2 + 48079 0.69 0.793093
Target:  5'- gGGUGGCGGGCUGCgUCGccuucGGUgACGUc -3'
miRNA:   3'- -CCGCCGCUCGGCG-AGUu----UCAgUGCGa -5'
1842 5' -57.3 NC_001347.2 + 55294 0.66 0.927522
Target:  5'- uGGU-GCGGGCCGUgccggUGGAGUCGCaGCa -3'
miRNA:   3'- -CCGcCGCUCGGCGa----GUUUCAGUG-CGa -5'
1842 5' -57.3 NC_001347.2 + 55506 0.66 0.916859
Target:  5'- cGGCGGCGAcguggGUCGCgaguUCAuguuGG-CGCGCg -3'
miRNA:   3'- -CCGCCGCU-----CGGCG----AGUu---UCaGUGCGa -5'
1842 5' -57.3 NC_001347.2 + 58171 0.69 0.818715
Target:  5'- uGGCGGUGGGUCcCgacgaCGAGGUgGCGCa -3'
miRNA:   3'- -CCGCCGCUCGGcGa----GUUUCAgUGCGa -5'
1842 5' -57.3 NC_001347.2 + 66665 0.71 0.700125
Target:  5'- aGCGcCGAGCCGCggCugcccGGGUCGCGCa -3'
miRNA:   3'- cCGCcGCUCGGCGa-Gu----UUCAGUGCGa -5'
1842 5' -57.3 NC_001347.2 + 68322 0.68 0.849873
Target:  5'- cGGgGGUGGucacguccaguccGCCGCUCAuuuuGUgGCGCg -3'
miRNA:   3'- -CCgCCGCU-------------CGGCGAGUuu--CAgUGCGa -5'
1842 5' -57.3 NC_001347.2 + 70835 0.71 0.680629
Target:  5'- uGCGGCcgcGGCCGCUCGAugacgauGUCgGCGCg -3'
miRNA:   3'- cCGCCGc--UCGGCGAGUUu------CAG-UGCGa -5'
1842 5' -57.3 NC_001347.2 + 71021 0.66 0.916859
Target:  5'- aGGCGGCGAGgCGaaacuGGUgCugGCg -3'
miRNA:   3'- -CCGCCGCUCgGCgaguuUCA-GugCGa -5'
1842 5' -57.3 NC_001347.2 + 72282 0.68 0.842917
Target:  5'- cGGCGGC-AGCUGCggCGguAGGaCACGCg -3'
miRNA:   3'- -CCGCCGcUCGGCGa-GU--UUCaGUGCGa -5'
1842 5' -57.3 NC_001347.2 + 73324 0.76 0.399454
Target:  5'- uGGUGGCGAGCgCGCUCcGGGcCAuCGCg -3'
miRNA:   3'- -CCGCCGCUCG-GCGAGuUUCaGU-GCGa -5'
1842 5' -57.3 NC_001347.2 + 73478 0.69 0.810323
Target:  5'- aGCGGCGGGCCaggacgUCGGAGggucCGCGCg -3'
miRNA:   3'- cCGCCGCUCGGcg----AGUUUCa---GUGCGa -5'
1842 5' -57.3 NC_001347.2 + 73610 0.66 0.927522
Target:  5'- uGGCGGCGGGUCGUggCGGcuGUguCGUUg -3'
miRNA:   3'- -CCGCCGCUCGGCGa-GUUu-CAguGCGA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.