miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18420 3' -58.5 NC_004681.1 + 40493 0.66 0.677598
Target:  5'- gGGuGGAGAcaccgGCCACG-CUgGCGGUGCc -3'
miRNA:   3'- -CC-CCUCUag---UGGUGCuGGgCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 52865 0.66 0.677598
Target:  5'- --cGAGGUgcugucCGCCAgguCGACCaUGCAGCGCg -3'
miRNA:   3'- cccCUCUA------GUGGU---GCUGG-GCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 65081 0.66 0.677598
Target:  5'- cGGGuGGUCGCCGagguCGGCCUgGCaaugauggaaGGCGCc -3'
miRNA:   3'- cCCCuCUAGUGGU----GCUGGG-CG----------UCGCG- -5'
18420 3' -58.5 NC_004681.1 + 1677 0.66 0.676562
Target:  5'- cGGGGAGGcccagucagucccUCACCAU--CCUGUAGcCGUc -3'
miRNA:   3'- -CCCCUCU-------------AGUGGUGcuGGGCGUC-GCG- -5'
18420 3' -58.5 NC_004681.1 + 17334 0.66 0.667231
Target:  5'- cGGGAGGUaGCCGuagcCGuAUCCGCcAGCGUu -3'
miRNA:   3'- cCCCUCUAgUGGU----GC-UGGGCG-UCGCG- -5'
18420 3' -58.5 NC_004681.1 + 12781 0.66 0.667231
Target:  5'- cGGuGGGUCGCUccguucucacgGCGACCgaCGCAGCuGCa -3'
miRNA:   3'- cCCcUCUAGUGG-----------UGCUGG--GCGUCG-CG- -5'
18420 3' -58.5 NC_004681.1 + 6514 0.66 0.667231
Target:  5'- -cGGGGAagACC--GAgCCGCGGCGCc -3'
miRNA:   3'- ccCCUCUagUGGugCUgGGCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 7582 0.66 0.667231
Target:  5'- cGGGGAGGccgugauggCACCuACG-CCCGCGacuuCGCc -3'
miRNA:   3'- -CCCCUCUa--------GUGG-UGCuGGGCGUc---GCG- -5'
18420 3' -58.5 NC_004681.1 + 42306 0.66 0.656835
Target:  5'- cGGGAGcAucgucaagcUCACCAUccccGCCCacgcGCAGCGCu -3'
miRNA:   3'- cCCCUC-U---------AGUGGUGc---UGGG----CGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 54009 0.66 0.656835
Target:  5'- cGGGGGucUCGcauugcuggcuuCCACGAgggUCCGCcGCGCg -3'
miRNA:   3'- -CCCCUcuAGU------------GGUGCU---GGGCGuCGCG- -5'
18420 3' -58.5 NC_004681.1 + 31510 0.66 0.646419
Target:  5'- aGGGAGcugCACCAuCGGgcagUCCGUcGCGCg -3'
miRNA:   3'- cCCCUCua-GUGGU-GCU----GGGCGuCGCG- -5'
18420 3' -58.5 NC_004681.1 + 39894 0.66 0.646419
Target:  5'- gGGcGGAGAcccccaGCgCGCGGCCaGCuGCGCa -3'
miRNA:   3'- -CC-CCUCUag----UG-GUGCUGGgCGuCGCG- -5'
18420 3' -58.5 NC_004681.1 + 32288 0.66 0.646419
Target:  5'- gGGuGGAGcUCaACgGCGACCCccaGCcuuGGCGCu -3'
miRNA:   3'- -CC-CCUCuAG-UGgUGCUGGG---CG---UCGCG- -5'
18420 3' -58.5 NC_004681.1 + 14453 0.66 0.645377
Target:  5'- aGGcGGAGGcgaaCGCCGCGcGCgCCGCcuccgccgagcagGGCGCg -3'
miRNA:   3'- -CC-CCUCUa---GUGGUGC-UG-GGCG-------------UCGCG- -5'
18420 3' -58.5 NC_004681.1 + 57924 0.66 0.643291
Target:  5'- aGGGaGGGGccagccccgcuccuUCGCCAccuCGGCggCGCGGCGCg -3'
miRNA:   3'- -CCC-CUCU--------------AGUGGU---GCUGg-GCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 20137 0.66 0.640163
Target:  5'- -uGGAGGgccaggucgucaugcUCACCACGcuGCCCcgGCuGCGCu -3'
miRNA:   3'- ccCCUCU---------------AGUGGUGC--UGGG--CGuCGCG- -5'
18420 3' -58.5 NC_004681.1 + 51721 0.66 0.634948
Target:  5'- cGGGGAaccugguGGUCGuCgGCGgccGCCC-CGGCGCg -3'
miRNA:   3'- -CCCCU-------CUAGU-GgUGC---UGGGcGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 56019 0.67 0.625559
Target:  5'- aGGGuGGcGGgcaCGCgCACGACCugCGCGGCGUa -3'
miRNA:   3'- -CCC-CU-CUa--GUG-GUGCUGG--GCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 40364 0.67 0.625559
Target:  5'- aGGGuGAaCACCgccagcaagaGCGGCaCCGCcAGCGUg -3'
miRNA:   3'- cCCCuCUaGUGG----------UGCUG-GGCG-UCGCG- -5'
18420 3' -58.5 NC_004681.1 + 49998 0.67 0.625559
Target:  5'- -uGGAGAcCACCAU--CCCGC-GCGCc -3'
miRNA:   3'- ccCCUCUaGUGGUGcuGGGCGuCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.