Results 21 - 40 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18420 | 3' | -58.5 | NC_004681.1 | + | 16726 | 0.67 | 0.615133 |
Target: 5'- cGGGcuGAUgcccgccgccucCAUCGCGGCCUGCAGuUGCa -3' miRNA: 3'- cCCCu-CUA------------GUGGUGCUGGGCGUC-GCG- -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 48771 | 0.67 | 0.625559 |
Target: 5'- uGGGAGcuggccCGCCAgGGuuCCCGCcAGCGUg -3' miRNA: 3'- cCCCUCua----GUGGUgCU--GGGCG-UCGCG- -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 49312 | 0.67 | 0.622431 |
Target: 5'- cGGGcGGUCugCACaACCUcaccguccgccacgGCGGCGCc -3' miRNA: 3'- cCCCuCUAGugGUGcUGGG--------------CGUCGCG- -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 74429 | 0.67 | 0.615133 |
Target: 5'- cGGGGcGGUCcaGCCACG--UCGCuuuGCGCa -3' miRNA: 3'- -CCCCuCUAG--UGGUGCugGGCGu--CGCG- -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 34494 | 0.67 | 0.591217 |
Target: 5'- aGGGugcagaguuugaucGGGAUCGUCugGGgguggauuUCCGCAGCGCg -3' miRNA: 3'- -CCC--------------CUCUAGUGGugCU--------GGGCGUCGCG- -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 56019 | 0.67 | 0.625559 |
Target: 5'- aGGGuGGcGGgcaCGCgCACGACCugCGCGGCGUa -3' miRNA: 3'- -CCC-CU-CUa--GUG-GUGCUGG--GCGUCGCG- -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 39275 | 0.67 | 0.615133 |
Target: 5'- aGGGcGAGcAUCuCCGCGGCCCGgA-UGCc -3' miRNA: 3'- -CCC-CUC-UAGuGGUGCUGGGCgUcGCG- -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 22754 | 0.67 | 0.572609 |
Target: 5'- cGGGGAugcggacguaggcGAUCugCuuGCGcgcggcgcuGCCCGCGGUGUc -3' miRNA: 3'- -CCCCU-------------CUAGugG--UGC---------UGGGCGUCGCG- -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 22912 | 0.67 | 0.583966 |
Target: 5'- aGGcGGGGUCGCCccgGCGAUgCCGUAGUaGCg -3' miRNA: 3'- cCC-CUCUAGUGG---UGCUG-GGCGUCG-CG- -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 36132 | 0.67 | 0.594329 |
Target: 5'- cGGGGAGGaaGCgugaGCGACCCGguGaagGUa -3' miRNA: 3'- -CCCCUCUagUGg---UGCUGGGCguCg--CG- -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 4079 | 0.67 | 0.594329 |
Target: 5'- cGGGuuguccGGGUCuuCCAUGACCCGUuccaucucccGGUGCu -3' miRNA: 3'- cCCC------UCUAGu-GGUGCUGGGCG----------UCGCG- -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 16678 | 0.67 | 0.615133 |
Target: 5'- cGGGGA---CGCCgGgGGCuuGUAGCGCu -3' miRNA: 3'- -CCCCUcuaGUGG-UgCUGggCGUCGCG- -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 2835 | 0.67 | 0.60472 |
Target: 5'- cGGGGAccgccgcuacacGGUCACCGuc-CCCGaGGCGCu -3' miRNA: 3'- -CCCCU------------CUAGUGGUgcuGGGCgUCGCG- -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 62273 | 0.67 | 0.60472 |
Target: 5'- gGGGGcaAGAUCACCGCcgaggaguucGACgCGggauggaAGCGCa -3' miRNA: 3'- -CCCC--UCUAGUGGUG----------CUGgGCg------UCGCG- -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 57788 | 0.67 | 0.594329 |
Target: 5'- -cGGAGA---CCGCGACCaCGCGccGCGCc -3' miRNA: 3'- ccCCUCUaguGGUGCUGG-GCGU--CGCG- -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 9661 | 0.67 | 0.591217 |
Target: 5'- gGGGGccGGGUCACCuCGGCCCcCucauuuacacgaaaGGCGUu -3' miRNA: 3'- -CCCC--UCUAGUGGuGCUGGGcG--------------UCGCG- -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 54693 | 0.67 | 0.580864 |
Target: 5'- -aGGAGAUCGCCugGcuggucuccgugcuGCaCCaGUGGCGCu -3' miRNA: 3'- ccCCUCUAGUGGugC--------------UG-GG-CGUCGCG- -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 6633 | 0.67 | 0.615133 |
Target: 5'- uGGGGGGuggcuUCugCAUgaGGCgCCGCGGCu- -3' miRNA: 3'- -CCCCUCu----AGugGUG--CUG-GGCGUCGcg -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 14888 | 0.67 | 0.60472 |
Target: 5'- uGGGcgccagccuucaGGAUgGCCAgGGCguCCGCGGCGUc -3' miRNA: 3'- cCCC------------UCUAgUGGUgCUG--GGCGUCGCG- -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 44693 | 0.68 | 0.512809 |
Target: 5'- cGGGGuGAguagUGCgGCGGCCgCG-AGCGCg -3' miRNA: 3'- -CCCCuCUa---GUGgUGCUGG-GCgUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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