miRNA display CGI


Results 1 - 20 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18420 3' -58.5 NC_004681.1 + 24751 1.14 0.000403
Target:  5'- gGGGGAGAUCACCACGACCCGCAGCGCa -3'
miRNA:   3'- -CCCCUCUAGUGGUGCUGGGCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 32344 0.8 0.099279
Target:  5'- cGGGAGAuuggcgacaucgUCACCGaucCGGCCCGCGGCGa -3'
miRNA:   3'- cCCCUCU------------AGUGGU---GCUGGGCGUCGCg -5'
18420 3' -58.5 NC_004681.1 + 1543 0.78 0.133102
Target:  5'- gGGGGAcuuGAUgACCcCG-CCCGCGGCGCc -3'
miRNA:   3'- -CCCCU---CUAgUGGuGCuGGGCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 66978 0.78 0.133102
Target:  5'- cGGGGAcaGUCACguCGGCCUGCAcGCGCg -3'
miRNA:   3'- -CCCCUc-UAGUGguGCUGGGCGU-CGCG- -5'
18420 3' -58.5 NC_004681.1 + 41000 0.77 0.147847
Target:  5'- gGGGGuGGUCACCAUGAUgagCGCGGCGa -3'
miRNA:   3'- -CCCCuCUAGUGGUGCUGg--GCGUCGCg -5'
18420 3' -58.5 NC_004681.1 + 67490 0.76 0.172762
Target:  5'- cGGGAcGAuUCugUACGGCCUGCuGCGCg -3'
miRNA:   3'- cCCCU-CU-AGugGUGCUGGGCGuCGCG- -5'
18420 3' -58.5 NC_004681.1 + 46931 0.76 0.191393
Target:  5'- cGGGGcGGUUGCCGCGGggcugcguCUCGUAGCGCu -3'
miRNA:   3'- -CCCCuCUAGUGGUGCU--------GGGCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 39363 0.75 0.199833
Target:  5'- cGGGGAGuacuugaCGCgGCGGCCCuuggcgcccuugccGCGGCGCa -3'
miRNA:   3'- -CCCCUCua-----GUGgUGCUGGG--------------CGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 50774 0.73 0.298073
Target:  5'- aGGGGGGUCAuguCCccggugcgguagGCGuCUCGCAGCGCu -3'
miRNA:   3'- cCCCUCUAGU---GG------------UGCuGGGCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 52357 0.71 0.350554
Target:  5'- -aGGAauGAUCgaACUAgUGGCCCGCGGCGCg -3'
miRNA:   3'- ccCCU--CUAG--UGGU-GCUGGGCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 69480 0.71 0.366707
Target:  5'- cGGGGAGuuga-CACGAuuCCUGguGCGCg -3'
miRNA:   3'- -CCCCUCuagugGUGCU--GGGCguCGCG- -5'
18420 3' -58.5 NC_004681.1 + 15133 0.7 0.400519
Target:  5'- -uGGuG-UCuGCCaACGGCCCGCAGCGUg -3'
miRNA:   3'- ccCCuCuAG-UGG-UGCUGGGCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 39817 0.7 0.400519
Target:  5'- uGGGGcaagaccguGGAccgCACCGCGcgcaccgcGCCCGCGcGCGCc -3'
miRNA:   3'- -CCCC---------UCUa--GUGGUGC--------UGGGCGU-CGCG- -5'
18420 3' -58.5 NC_004681.1 + 36876 0.7 0.400519
Target:  5'- cGGGGGGcggGCCAgCGGCCUGgCAGaCGCg -3'
miRNA:   3'- -CCCCUCuagUGGU-GCUGGGC-GUC-GCG- -5'
18420 3' -58.5 NC_004681.1 + 40218 0.7 0.409277
Target:  5'- cGGGcGGUCACCgaccugGCGAccCCCGgGGUGCa -3'
miRNA:   3'- cCCCuCUAGUGG------UGCU--GGGCgUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 17572 0.7 0.418154
Target:  5'- uGGGGcAGugaCGCCGCGGCCa--AGCGCc -3'
miRNA:   3'- -CCCC-UCua-GUGGUGCUGGgcgUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 59459 0.7 0.427147
Target:  5'- uGGGGAGGcgUCAgCUACGaaGCCCG-GGUGCa -3'
miRNA:   3'- -CCCCUCU--AGU-GGUGC--UGGGCgUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 20035 0.7 0.44547
Target:  5'- cGGGGAG--CACCugcguguugaGCaGGCCCGCGGUGg -3'
miRNA:   3'- -CCCCUCuaGUGG----------UG-CUGGGCGUCGCg -5'
18420 3' -58.5 NC_004681.1 + 36929 0.69 0.454795
Target:  5'- ----cGAUUcugcgaagcaGCCACGGCCCGCGGCGa -3'
miRNA:   3'- ccccuCUAG----------UGGUGCUGGGCGUCGCg -5'
18420 3' -58.5 NC_004681.1 + 44723 0.69 0.454795
Target:  5'- -----cGUCACCACcACCUGCGGCGCc -3'
miRNA:   3'- ccccucUAGUGGUGcUGGGCGUCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.