Results 21 - 40 of 78 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18420 | 3' | -58.5 | NC_004681.1 | + | 6395 | 0.69 | 0.473756 |
Target: 5'- gGGGGAGGagGCCcCGGCgCCGaAGCGa -3' miRNA: 3'- -CCCCUCUagUGGuGCUG-GGCgUCGCg -5' |
|||||||
18420 | 3' | -58.5 | NC_004681.1 | + | 4232 | 0.69 | 0.483384 |
Target: 5'- uGGGGuuGUUgcggGCCucaGCGGCCUGCuuGCGCa -3' miRNA: 3'- -CCCCucUAG----UGG---UGCUGGGCGu-CGCG- -5' |
|||||||
18420 | 3' | -58.5 | NC_004681.1 | + | 69182 | 0.69 | 0.483384 |
Target: 5'- -uGGAGAUCAUCugGuCuuGCGGCa- -3' miRNA: 3'- ccCCUCUAGUGGugCuGggCGUCGcg -5' |
|||||||
18420 | 3' | -58.5 | NC_004681.1 | + | 12979 | 0.69 | 0.483384 |
Target: 5'- uGGGuGuGGUCACCcgcaGCGG-CCGUAGUGCc -3' miRNA: 3'- -CCC-CuCUAGUGG----UGCUgGGCGUCGCG- -5' |
|||||||
18420 | 3' | -58.5 | NC_004681.1 | + | 46884 | 0.69 | 0.493105 |
Target: 5'- gGGuGGAGuUCACCGucuucgGGCUCGCGGCGa -3' miRNA: 3'- -CC-CCUCuAGUGGUg-----CUGGGCGUCGCg -5' |
|||||||
18420 | 3' | -58.5 | NC_004681.1 | + | 7447 | 0.68 | 0.512809 |
Target: 5'- cGGGAGGcuUCGCCGCGG-CgGCGGgGUc -3' miRNA: 3'- cCCCUCU--AGUGGUGCUgGgCGUCgCG- -5' |
|||||||
18420 | 3' | -58.5 | NC_004681.1 | + | 44693 | 0.68 | 0.512809 |
Target: 5'- cGGGGuGAguagUGCgGCGGCCgCG-AGCGCg -3' miRNA: 3'- -CCCCuCUa---GUGgUGCUGG-GCgUCGCG- -5' |
|||||||
18420 | 3' | -58.5 | NC_004681.1 | + | 16379 | 0.68 | 0.518783 |
Target: 5'- cGGGGAGcugguagcccugCGCCugGuccaccguguACUCGCGGUGCu -3' miRNA: 3'- -CCCCUCua----------GUGGugC----------UGGGCGUCGCG- -5' |
|||||||
18420 | 3' | -58.5 | NC_004681.1 | + | 40266 | 0.68 | 0.522782 |
Target: 5'- cGGGucuaucucAUCGCCuCGAUCUGCGGCGUc -3' miRNA: 3'- cCCCuc------UAGUGGuGCUGGGCGUCGCG- -5' |
|||||||
18420 | 3' | -58.5 | NC_004681.1 | + | 17748 | 0.68 | 0.522782 |
Target: 5'- --cGAGGUCGCCAagGGCCaggaGCAGgGCg -3' miRNA: 3'- cccCUCUAGUGGUg-CUGGg---CGUCgCG- -5' |
|||||||
18420 | 3' | -58.5 | NC_004681.1 | + | 54836 | 0.68 | 0.522782 |
Target: 5'- cGGGGGccuGGUCAUCGuCGGagaCGUAGCGCc -3' miRNA: 3'- -CCCCU---CUAGUGGU-GCUgg-GCGUCGCG- -5' |
|||||||
18420 | 3' | -58.5 | NC_004681.1 | + | 36536 | 0.68 | 0.522782 |
Target: 5'- gGGGGAGAggaaGCgaugaGCGACCCgGUAacccGCGCa -3' miRNA: 3'- -CCCCUCUag--UGg----UGCUGGG-CGU----CGCG- -5' |
|||||||
18420 | 3' | -58.5 | NC_004681.1 | + | 60458 | 0.68 | 0.532829 |
Target: 5'- aGGGcGGAUCGCUagcgACGaACCCGagcuuGCGCa -3' miRNA: 3'- -CCCcUCUAGUGG----UGC-UGGGCgu---CGCG- -5' |
|||||||
18420 | 3' | -58.5 | NC_004681.1 | + | 28610 | 0.68 | 0.532829 |
Target: 5'- -uGGAGAUgACCGCGgggguGCCCGgGGUGa -3' miRNA: 3'- ccCCUCUAgUGGUGC-----UGGGCgUCGCg -5' |
|||||||
18420 | 3' | -58.5 | NC_004681.1 | + | 56535 | 0.68 | 0.549043 |
Target: 5'- uGGGuGAcGAUgACCucGCGGCCCGCcuccaacagguguGCGCu -3' miRNA: 3'- -CCC-CU-CUAgUGG--UGCUGGGCGu------------CGCG- -5' |
|||||||
18420 | 3' | -58.5 | NC_004681.1 | + | 68629 | 0.68 | 0.550062 |
Target: 5'- cGGGGAGAacCACCggcauggcgcccagGCGugCCGCgAGC-Ca -3' miRNA: 3'- -CCCCUCUa-GUGG--------------UGCugGGCG-UCGcG- -5' |
|||||||
18420 | 3' | -58.5 | NC_004681.1 | + | 60606 | 0.68 | 0.560279 |
Target: 5'- cGGGaAGAUgugaccgccauugcCGCCACuaauCCCGCuGCGCa -3' miRNA: 3'- cCCC-UCUA--------------GUGGUGcu--GGGCGuCGCG- -5' |
|||||||
18420 | 3' | -58.5 | NC_004681.1 | + | 37663 | 0.68 | 0.563356 |
Target: 5'- cGGGGcc-UCGCCAgCGGCCgCGCGuCGCu -3' miRNA: 3'- -CCCCucuAGUGGU-GCUGG-GCGUcGCG- -5' |
|||||||
18420 | 3' | -58.5 | NC_004681.1 | + | 49787 | 0.68 | 0.563356 |
Target: 5'- gGGGGAGGUagagGCCGCaGAgCgCGCAGUaGCc -3' miRNA: 3'- -CCCCUCUAg---UGGUG-CUgG-GCGUCG-CG- -5' |
|||||||
18420 | 3' | -58.5 | NC_004681.1 | + | 22754 | 0.67 | 0.572609 |
Target: 5'- cGGGGAugcggacguaggcGAUCugCuuGCGcgcggcgcuGCCCGCGGUGUc -3' miRNA: 3'- -CCCCU-------------CUAGugG--UGC---------UGGGCGUCGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home