miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18420 3' -58.5 NC_004681.1 + 56019 0.67 0.625559
Target:  5'- aGGGuGGcGGgcaCGCgCACGACCugCGCGGCGUa -3'
miRNA:   3'- -CCC-CU-CUa--GUG-GUGCUGG--GCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 48771 0.67 0.625559
Target:  5'- uGGGAGcuggccCGCCAgGGuuCCCGCcAGCGUg -3'
miRNA:   3'- cCCCUCua----GUGGUgCU--GGGCG-UCGCG- -5'
18420 3' -58.5 NC_004681.1 + 49312 0.67 0.622431
Target:  5'- cGGGcGGUCugCACaACCUcaccguccgccacgGCGGCGCc -3'
miRNA:   3'- cCCCuCUAGugGUGcUGGG--------------CGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 6633 0.67 0.615133
Target:  5'- uGGGGGGuggcuUCugCAUgaGGCgCCGCGGCu- -3'
miRNA:   3'- -CCCCUCu----AGugGUG--CUG-GGCGUCGcg -5'
18420 3' -58.5 NC_004681.1 + 16678 0.67 0.615133
Target:  5'- cGGGGA---CGCCgGgGGCuuGUAGCGCu -3'
miRNA:   3'- -CCCCUcuaGUGG-UgCUGggCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 39275 0.67 0.615133
Target:  5'- aGGGcGAGcAUCuCCGCGGCCCGgA-UGCc -3'
miRNA:   3'- -CCC-CUC-UAGuGGUGCUGGGCgUcGCG- -5'
18420 3' -58.5 NC_004681.1 + 16726 0.67 0.615133
Target:  5'- cGGGcuGAUgcccgccgccucCAUCGCGGCCUGCAGuUGCa -3'
miRNA:   3'- cCCCu-CUA------------GUGGUGCUGGGCGUC-GCG- -5'
18420 3' -58.5 NC_004681.1 + 74429 0.67 0.615133
Target:  5'- cGGGGcGGUCcaGCCACG--UCGCuuuGCGCa -3'
miRNA:   3'- -CCCCuCUAG--UGGUGCugGGCGu--CGCG- -5'
18420 3' -58.5 NC_004681.1 + 14888 0.67 0.60472
Target:  5'- uGGGcgccagccuucaGGAUgGCCAgGGCguCCGCGGCGUc -3'
miRNA:   3'- cCCC------------UCUAgUGGUgCUG--GGCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 2835 0.67 0.60472
Target:  5'- cGGGGAccgccgcuacacGGUCACCGuc-CCCGaGGCGCu -3'
miRNA:   3'- -CCCCU------------CUAGUGGUgcuGGGCgUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 62273 0.67 0.60472
Target:  5'- gGGGGcaAGAUCACCGCcgaggaguucGACgCGggauggaAGCGCa -3'
miRNA:   3'- -CCCC--UCUAGUGGUG----------CUGgGCg------UCGCG- -5'
18420 3' -58.5 NC_004681.1 + 57788 0.67 0.594329
Target:  5'- -cGGAGA---CCGCGACCaCGCGccGCGCc -3'
miRNA:   3'- ccCCUCUaguGGUGCUGG-GCGU--CGCG- -5'
18420 3' -58.5 NC_004681.1 + 36132 0.67 0.594329
Target:  5'- cGGGGAGGaaGCgugaGCGACCCGguGaagGUa -3'
miRNA:   3'- -CCCCUCUagUGg---UGCUGGGCguCg--CG- -5'
18420 3' -58.5 NC_004681.1 + 4079 0.67 0.594329
Target:  5'- cGGGuuguccGGGUCuuCCAUGACCCGUuccaucucccGGUGCu -3'
miRNA:   3'- cCCC------UCUAGu-GGUGCUGGGCG----------UCGCG- -5'
18420 3' -58.5 NC_004681.1 + 34494 0.67 0.591217
Target:  5'- aGGGugcagaguuugaucGGGAUCGUCugGGgguggauuUCCGCAGCGCg -3'
miRNA:   3'- -CCC--------------CUCUAGUGGugCU--------GGGCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 9661 0.67 0.591217
Target:  5'- gGGGGccGGGUCACCuCGGCCCcCucauuuacacgaaaGGCGUu -3'
miRNA:   3'- -CCCC--UCUAGUGGuGCUGGGcG--------------UCGCG- -5'
18420 3' -58.5 NC_004681.1 + 22912 0.67 0.583966
Target:  5'- aGGcGGGGUCGCCccgGCGAUgCCGUAGUaGCg -3'
miRNA:   3'- cCC-CUCUAGUGG---UGCUG-GGCGUCG-CG- -5'
18420 3' -58.5 NC_004681.1 + 54693 0.67 0.580864
Target:  5'- -aGGAGAUCGCCugGcuggucuccgugcuGCaCCaGUGGCGCu -3'
miRNA:   3'- ccCCUCUAGUGGugC--------------UG-GG-CGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 22754 0.67 0.572609
Target:  5'- cGGGGAugcggacguaggcGAUCugCuuGCGcgcggcgcuGCCCGCGGUGUc -3'
miRNA:   3'- -CCCCU-------------CUAGugG--UGC---------UGGGCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 37663 0.68 0.563356
Target:  5'- cGGGGcc-UCGCCAgCGGCCgCGCGuCGCu -3'
miRNA:   3'- -CCCCucuAGUGGU-GCUGG-GCGUcGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.