miRNA display CGI


Results 1 - 20 of 78 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18420 3' -58.5 NC_004681.1 + 1543 0.78 0.133102
Target:  5'- gGGGGAcuuGAUgACCcCG-CCCGCGGCGCc -3'
miRNA:   3'- -CCCCU---CUAgUGGuGCuGGGCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 1677 0.66 0.676562
Target:  5'- cGGGGAGGcccagucagucccUCACCAU--CCUGUAGcCGUc -3'
miRNA:   3'- -CCCCUCU-------------AGUGGUGcuGGGCGUC-GCG- -5'
18420 3' -58.5 NC_004681.1 + 2835 0.67 0.60472
Target:  5'- cGGGGAccgccgcuacacGGUCACCGuc-CCCGaGGCGCu -3'
miRNA:   3'- -CCCCU------------CUAGUGGUgcuGGGCgUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 4079 0.67 0.594329
Target:  5'- cGGGuuguccGGGUCuuCCAUGACCCGUuccaucucccGGUGCu -3'
miRNA:   3'- cCCC------UCUAGu-GGUGCUGGGCG----------UCGCG- -5'
18420 3' -58.5 NC_004681.1 + 4232 0.69 0.483384
Target:  5'- uGGGGuuGUUgcggGCCucaGCGGCCUGCuuGCGCa -3'
miRNA:   3'- -CCCCucUAG----UGG---UGCUGGGCGu-CGCG- -5'
18420 3' -58.5 NC_004681.1 + 6395 0.69 0.473756
Target:  5'- gGGGGAGGagGCCcCGGCgCCGaAGCGa -3'
miRNA:   3'- -CCCCUCUagUGGuGCUG-GGCgUCGCg -5'
18420 3' -58.5 NC_004681.1 + 6514 0.66 0.667231
Target:  5'- -cGGGGAagACC--GAgCCGCGGCGCc -3'
miRNA:   3'- ccCCUCUagUGGugCUgGGCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 6633 0.67 0.615133
Target:  5'- uGGGGGGuggcuUCugCAUgaGGCgCCGCGGCu- -3'
miRNA:   3'- -CCCCUCu----AGugGUG--CUG-GGCGUCGcg -5'
18420 3' -58.5 NC_004681.1 + 7447 0.68 0.512809
Target:  5'- cGGGAGGcuUCGCCGCGG-CgGCGGgGUc -3'
miRNA:   3'- cCCCUCU--AGUGGUGCUgGgCGUCgCG- -5'
18420 3' -58.5 NC_004681.1 + 7582 0.66 0.667231
Target:  5'- cGGGGAGGccgugauggCACCuACG-CCCGCGacuuCGCc -3'
miRNA:   3'- -CCCCUCUa--------GUGG-UGCuGGGCGUc---GCG- -5'
18420 3' -58.5 NC_004681.1 + 9661 0.67 0.591217
Target:  5'- gGGGGccGGGUCACCuCGGCCCcCucauuuacacgaaaGGCGUu -3'
miRNA:   3'- -CCCC--UCUAGUGGuGCUGGGcG--------------UCGCG- -5'
18420 3' -58.5 NC_004681.1 + 12383 0.67 0.625559
Target:  5'- cGGGuGG-CACCACca-CCGCGGCGa -3'
miRNA:   3'- cCCCuCUaGUGGUGcugGGCGUCGCg -5'
18420 3' -58.5 NC_004681.1 + 12781 0.66 0.667231
Target:  5'- cGGuGGGUCGCUccguucucacgGCGACCgaCGCAGCuGCa -3'
miRNA:   3'- cCCcUCUAGUGG-----------UGCUGG--GCGUCG-CG- -5'
18420 3' -58.5 NC_004681.1 + 12979 0.69 0.483384
Target:  5'- uGGGuGuGGUCACCcgcaGCGG-CCGUAGUGCc -3'
miRNA:   3'- -CCC-CuCUAGUGG----UGCUgGGCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 14453 0.66 0.645377
Target:  5'- aGGcGGAGGcgaaCGCCGCGcGCgCCGCcuccgccgagcagGGCGCg -3'
miRNA:   3'- -CC-CCUCUa---GUGGUGC-UG-GGCG-------------UCGCG- -5'
18420 3' -58.5 NC_004681.1 + 14888 0.67 0.60472
Target:  5'- uGGGcgccagccuucaGGAUgGCCAgGGCguCCGCGGCGUc -3'
miRNA:   3'- cCCC------------UCUAgUGGUgCUG--GGCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 15133 0.7 0.400519
Target:  5'- -uGGuG-UCuGCCaACGGCCCGCAGCGUg -3'
miRNA:   3'- ccCCuCuAG-UGG-UGCUGGGCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 16379 0.68 0.518783
Target:  5'- cGGGGAGcugguagcccugCGCCugGuccaccguguACUCGCGGUGCu -3'
miRNA:   3'- -CCCCUCua----------GUGGugC----------UGGGCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 16678 0.67 0.615133
Target:  5'- cGGGGA---CGCCgGgGGCuuGUAGCGCu -3'
miRNA:   3'- -CCCCUcuaGUGG-UgCUGggCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 16726 0.67 0.615133
Target:  5'- cGGGcuGAUgcccgccgccucCAUCGCGGCCUGCAGuUGCa -3'
miRNA:   3'- cCCCu-CUA------------GUGGUGCUGGGCGUC-GCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.