miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18420 3' -58.5 NC_004681.1 + 17334 0.66 0.667231
Target:  5'- cGGGAGGUaGCCGuagcCGuAUCCGCcAGCGUu -3'
miRNA:   3'- cCCCUCUAgUGGU----GC-UGGGCG-UCGCG- -5'
18420 3' -58.5 NC_004681.1 + 17572 0.7 0.418154
Target:  5'- uGGGGcAGugaCGCCGCGGCCa--AGCGCc -3'
miRNA:   3'- -CCCC-UCua-GUGGUGCUGGgcgUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 17748 0.68 0.522782
Target:  5'- --cGAGGUCGCCAagGGCCaggaGCAGgGCg -3'
miRNA:   3'- cccCUCUAGUGGUg-CUGGg---CGUCgCG- -5'
18420 3' -58.5 NC_004681.1 + 20035 0.7 0.44547
Target:  5'- cGGGGAG--CACCugcguguugaGCaGGCCCGCGGUGg -3'
miRNA:   3'- -CCCCUCuaGUGG----------UG-CUGGGCGUCGCg -5'
18420 3' -58.5 NC_004681.1 + 20137 0.66 0.640163
Target:  5'- -uGGAGGgccaggucgucaugcUCACCACGcuGCCCcgGCuGCGCu -3'
miRNA:   3'- ccCCUCU---------------AGUGGUGC--UGGG--CGuCGCG- -5'
18420 3' -58.5 NC_004681.1 + 22754 0.67 0.572609
Target:  5'- cGGGGAugcggacguaggcGAUCugCuuGCGcgcggcgcuGCCCGCGGUGUc -3'
miRNA:   3'- -CCCCU-------------CUAGugG--UGC---------UGGGCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 22912 0.67 0.583966
Target:  5'- aGGcGGGGUCGCCccgGCGAUgCCGUAGUaGCg -3'
miRNA:   3'- cCC-CUCUAGUGG---UGCUG-GGCGUCG-CG- -5'
18420 3' -58.5 NC_004681.1 + 24751 1.14 0.000403
Target:  5'- gGGGGAGAUCACCACGACCCGCAGCGCa -3'
miRNA:   3'- -CCCCUCUAGUGGUGCUGGGCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 28610 0.68 0.532829
Target:  5'- -uGGAGAUgACCGCGgggguGCCCGgGGUGa -3'
miRNA:   3'- ccCCUCUAgUGGUGC-----UGGGCgUCGCg -5'
18420 3' -58.5 NC_004681.1 + 31510 0.66 0.646419
Target:  5'- aGGGAGcugCACCAuCGGgcagUCCGUcGCGCg -3'
miRNA:   3'- cCCCUCua-GUGGU-GCU----GGGCGuCGCG- -5'
18420 3' -58.5 NC_004681.1 + 32288 0.66 0.646419
Target:  5'- gGGuGGAGcUCaACgGCGACCCccaGCcuuGGCGCu -3'
miRNA:   3'- -CC-CCUCuAG-UGgUGCUGGG---CG---UCGCG- -5'
18420 3' -58.5 NC_004681.1 + 32344 0.8 0.099279
Target:  5'- cGGGAGAuuggcgacaucgUCACCGaucCGGCCCGCGGCGa -3'
miRNA:   3'- cCCCUCU------------AGUGGU---GCUGGGCGUCGCg -5'
18420 3' -58.5 NC_004681.1 + 34494 0.67 0.591217
Target:  5'- aGGGugcagaguuugaucGGGAUCGUCugGGgguggauuUCCGCAGCGCg -3'
miRNA:   3'- -CCC--------------CUCUAGUGGugCU--------GGGCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 36132 0.67 0.594329
Target:  5'- cGGGGAGGaaGCgugaGCGACCCGguGaagGUa -3'
miRNA:   3'- -CCCCUCUagUGg---UGCUGGGCguCg--CG- -5'
18420 3' -58.5 NC_004681.1 + 36536 0.68 0.522782
Target:  5'- gGGGGAGAggaaGCgaugaGCGACCCgGUAacccGCGCa -3'
miRNA:   3'- -CCCCUCUag--UGg----UGCUGGG-CGU----CGCG- -5'
18420 3' -58.5 NC_004681.1 + 36876 0.7 0.400519
Target:  5'- cGGGGGGcggGCCAgCGGCCUGgCAGaCGCg -3'
miRNA:   3'- -CCCCUCuagUGGU-GCUGGGC-GUC-GCG- -5'
18420 3' -58.5 NC_004681.1 + 36929 0.69 0.454795
Target:  5'- ----cGAUUcugcgaagcaGCCACGGCCCGCGGCGa -3'
miRNA:   3'- ccccuCUAG----------UGGUGCUGGGCGUCGCg -5'
18420 3' -58.5 NC_004681.1 + 37663 0.68 0.563356
Target:  5'- cGGGGcc-UCGCCAgCGGCCgCGCGuCGCu -3'
miRNA:   3'- -CCCCucuAGUGGU-GCUGG-GCGUcGCG- -5'
18420 3' -58.5 NC_004681.1 + 39275 0.67 0.615133
Target:  5'- aGGGcGAGcAUCuCCGCGGCCCGgA-UGCc -3'
miRNA:   3'- -CCC-CUC-UAGuGGUGCUGGGCgUcGCG- -5'
18420 3' -58.5 NC_004681.1 + 39363 0.75 0.199833
Target:  5'- cGGGGAGuacuugaCGCgGCGGCCCuuggcgcccuugccGCGGCGCa -3'
miRNA:   3'- -CCCCUCua-----GUGgUGCUGGG--------------CGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.