miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18420 3' -58.5 NC_004681.1 + 74429 0.67 0.615133
Target:  5'- cGGGGcGGUCcaGCCACG--UCGCuuuGCGCa -3'
miRNA:   3'- -CCCCuCUAG--UGGUGCugGGCGu--CGCG- -5'
18420 3' -58.5 NC_004681.1 + 69480 0.71 0.366707
Target:  5'- cGGGGAGuuga-CACGAuuCCUGguGCGCg -3'
miRNA:   3'- -CCCCUCuagugGUGCU--GGGCguCGCG- -5'
18420 3' -58.5 NC_004681.1 + 69182 0.69 0.483384
Target:  5'- -uGGAGAUCAUCugGuCuuGCGGCa- -3'
miRNA:   3'- ccCCUCUAGUGGugCuGggCGUCGcg -5'
18420 3' -58.5 NC_004681.1 + 68629 0.68 0.550062
Target:  5'- cGGGGAGAacCACCggcauggcgcccagGCGugCCGCgAGC-Ca -3'
miRNA:   3'- -CCCCUCUa-GUGG--------------UGCugGGCG-UCGcG- -5'
18420 3' -58.5 NC_004681.1 + 67490 0.76 0.172762
Target:  5'- cGGGAcGAuUCugUACGGCCUGCuGCGCg -3'
miRNA:   3'- cCCCU-CU-AGugGUGCUGGGCGuCGCG- -5'
18420 3' -58.5 NC_004681.1 + 66978 0.78 0.133102
Target:  5'- cGGGGAcaGUCACguCGGCCUGCAcGCGCg -3'
miRNA:   3'- -CCCCUc-UAGUGguGCUGGGCGU-CGCG- -5'
18420 3' -58.5 NC_004681.1 + 65081 0.66 0.677598
Target:  5'- cGGGuGGUCGCCGagguCGGCCUgGCaaugauggaaGGCGCc -3'
miRNA:   3'- cCCCuCUAGUGGU----GCUGGG-CG----------UCGCG- -5'
18420 3' -58.5 NC_004681.1 + 62273 0.67 0.60472
Target:  5'- gGGGGcaAGAUCACCGCcgaggaguucGACgCGggauggaAGCGCa -3'
miRNA:   3'- -CCCC--UCUAGUGGUG----------CUGgGCg------UCGCG- -5'
18420 3' -58.5 NC_004681.1 + 60606 0.68 0.560279
Target:  5'- cGGGaAGAUgugaccgccauugcCGCCACuaauCCCGCuGCGCa -3'
miRNA:   3'- cCCC-UCUA--------------GUGGUGcu--GGGCGuCGCG- -5'
18420 3' -58.5 NC_004681.1 + 60458 0.68 0.532829
Target:  5'- aGGGcGGAUCGCUagcgACGaACCCGagcuuGCGCa -3'
miRNA:   3'- -CCCcUCUAGUGG----UGC-UGGGCgu---CGCG- -5'
18420 3' -58.5 NC_004681.1 + 59459 0.7 0.427147
Target:  5'- uGGGGAGGcgUCAgCUACGaaGCCCG-GGUGCa -3'
miRNA:   3'- -CCCCUCU--AGU-GGUGC--UGGGCgUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 57924 0.66 0.643291
Target:  5'- aGGGaGGGGccagccccgcuccuUCGCCAccuCGGCggCGCGGCGCg -3'
miRNA:   3'- -CCC-CUCU--------------AGUGGU---GCUGg-GCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 57788 0.67 0.594329
Target:  5'- -cGGAGA---CCGCGACCaCGCGccGCGCc -3'
miRNA:   3'- ccCCUCUaguGGUGCUGG-GCGU--CGCG- -5'
18420 3' -58.5 NC_004681.1 + 56535 0.68 0.549043
Target:  5'- uGGGuGAcGAUgACCucGCGGCCCGCcuccaacagguguGCGCu -3'
miRNA:   3'- -CCC-CU-CUAgUGG--UGCUGGGCGu------------CGCG- -5'
18420 3' -58.5 NC_004681.1 + 56019 0.67 0.625559
Target:  5'- aGGGuGGcGGgcaCGCgCACGACCugCGCGGCGUa -3'
miRNA:   3'- -CCC-CU-CUa--GUG-GUGCUGG--GCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 54836 0.68 0.522782
Target:  5'- cGGGGGccuGGUCAUCGuCGGagaCGUAGCGCc -3'
miRNA:   3'- -CCCCU---CUAGUGGU-GCUgg-GCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 54693 0.67 0.580864
Target:  5'- -aGGAGAUCGCCugGcuggucuccgugcuGCaCCaGUGGCGCu -3'
miRNA:   3'- ccCCUCUAGUGGugC--------------UG-GG-CGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 54009 0.66 0.656835
Target:  5'- cGGGGGucUCGcauugcuggcuuCCACGAgggUCCGCcGCGCg -3'
miRNA:   3'- -CCCCUcuAGU------------GGUGCU---GGGCGuCGCG- -5'
18420 3' -58.5 NC_004681.1 + 52865 0.66 0.677598
Target:  5'- --cGAGGUgcugucCGCCAgguCGACCaUGCAGCGCg -3'
miRNA:   3'- cccCUCUA------GUGGU---GCUGG-GCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 52357 0.71 0.350554
Target:  5'- -aGGAauGAUCgaACUAgUGGCCCGCGGCGCg -3'
miRNA:   3'- ccCCU--CUAG--UGGU-GCUGGGCGUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.