miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18420 3' -58.5 NC_004681.1 + 62273 0.67 0.60472
Target:  5'- gGGGGcaAGAUCACCGCcgaggaguucGACgCGggauggaAGCGCa -3'
miRNA:   3'- -CCCC--UCUAGUGGUG----------CUGgGCg------UCGCG- -5'
18420 3' -58.5 NC_004681.1 + 69182 0.69 0.483384
Target:  5'- -uGGAGAUCAUCugGuCuuGCGGCa- -3'
miRNA:   3'- ccCCUCUAGUGGugCuGggCGUCGcg -5'
18420 3' -58.5 NC_004681.1 + 46884 0.69 0.493105
Target:  5'- gGGuGGAGuUCACCGucuucgGGCUCGCGGCGa -3'
miRNA:   3'- -CC-CCUCuAGUGGUg-----CUGGGCGUCGCg -5'
18420 3' -58.5 NC_004681.1 + 17748 0.68 0.522782
Target:  5'- --cGAGGUCGCCAagGGCCaggaGCAGgGCg -3'
miRNA:   3'- cccCUCUAGUGGUg-CUGGg---CGUCgCG- -5'
18420 3' -58.5 NC_004681.1 + 60458 0.68 0.532829
Target:  5'- aGGGcGGAUCGCUagcgACGaACCCGagcuuGCGCa -3'
miRNA:   3'- -CCCcUCUAGUGG----UGC-UGGGCgu---CGCG- -5'
18420 3' -58.5 NC_004681.1 + 37663 0.68 0.563356
Target:  5'- cGGGGcc-UCGCCAgCGGCCgCGCGuCGCu -3'
miRNA:   3'- -CCCCucuAGUGGU-GCUGG-GCGUcGCG- -5'
18420 3' -58.5 NC_004681.1 + 54693 0.67 0.580864
Target:  5'- -aGGAGAUCGCCugGcuggucuccgugcuGCaCCaGUGGCGCu -3'
miRNA:   3'- ccCCUCUAGUGGugC--------------UG-GG-CGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 9661 0.67 0.591217
Target:  5'- gGGGGccGGGUCACCuCGGCCCcCucauuuacacgaaaGGCGUu -3'
miRNA:   3'- -CCCC--UCUAGUGGuGCUGGGcG--------------UCGCG- -5'
18420 3' -58.5 NC_004681.1 + 57788 0.67 0.594329
Target:  5'- -cGGAGA---CCGCGACCaCGCGccGCGCc -3'
miRNA:   3'- ccCCUCUaguGGUGCUGG-GCGU--CGCG- -5'
18420 3' -58.5 NC_004681.1 + 6395 0.69 0.473756
Target:  5'- gGGGGAGGagGCCcCGGCgCCGaAGCGa -3'
miRNA:   3'- -CCCCUCUagUGGuGCUG-GGCgUCGCg -5'
18420 3' -58.5 NC_004681.1 + 44723 0.69 0.454795
Target:  5'- -----cGUCACCACcACCUGCGGCGCc -3'
miRNA:   3'- ccccucUAGUGGUGcUGGGCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 59459 0.7 0.427147
Target:  5'- uGGGGAGGcgUCAgCUACGaaGCCCG-GGUGCa -3'
miRNA:   3'- -CCCCUCU--AGU-GGUGC--UGGGCgUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 32344 0.8 0.099279
Target:  5'- cGGGAGAuuggcgacaucgUCACCGaucCGGCCCGCGGCGa -3'
miRNA:   3'- cCCCUCU------------AGUGGU---GCUGGGCGUCGCg -5'
18420 3' -58.5 NC_004681.1 + 66978 0.78 0.133102
Target:  5'- cGGGGAcaGUCACguCGGCCUGCAcGCGCg -3'
miRNA:   3'- -CCCCUc-UAGUGguGCUGGGCGU-CGCG- -5'
18420 3' -58.5 NC_004681.1 + 67490 0.76 0.172762
Target:  5'- cGGGAcGAuUCugUACGGCCUGCuGCGCg -3'
miRNA:   3'- cCCCU-CU-AGugGUGCUGGGCGuCGCG- -5'
18420 3' -58.5 NC_004681.1 + 52357 0.71 0.350554
Target:  5'- -aGGAauGAUCgaACUAgUGGCCCGCGGCGCg -3'
miRNA:   3'- ccCCU--CUAG--UGGU-GCUGGGCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 69480 0.71 0.366707
Target:  5'- cGGGGAGuuga-CACGAuuCCUGguGCGCg -3'
miRNA:   3'- -CCCCUCuagugGUGCU--GGGCguCGCG- -5'
18420 3' -58.5 NC_004681.1 + 15133 0.7 0.400519
Target:  5'- -uGGuG-UCuGCCaACGGCCCGCAGCGUg -3'
miRNA:   3'- ccCCuCuAG-UGG-UGCUGGGCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 39817 0.7 0.400519
Target:  5'- uGGGGcaagaccguGGAccgCACCGCGcgcaccgcGCCCGCGcGCGCc -3'
miRNA:   3'- -CCCC---------UCUa--GUGGUGC--------UGGGCGU-CGCG- -5'
18420 3' -58.5 NC_004681.1 + 17572 0.7 0.418154
Target:  5'- uGGGGcAGugaCGCCGCGGCCa--AGCGCc -3'
miRNA:   3'- -CCCC-UCua-GUGGUGCUGGgcgUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.