Results 21 - 40 of 78 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18420 | 3' | -58.5 | NC_004681.1 | + | 9661 | 0.67 | 0.591217 |
Target: 5'- gGGGGccGGGUCACCuCGGCCCcCucauuuacacgaaaGGCGUu -3' miRNA: 3'- -CCCC--UCUAGUGGuGCUGGGcG--------------UCGCG- -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 39817 | 0.7 | 0.400519 |
Target: 5'- uGGGGcaagaccguGGAccgCACCGCGcgcaccgcGCCCGCGcGCGCc -3' miRNA: 3'- -CCCC---------UCUa--GUGGUGC--------UGGGCGU-CGCG- -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 15133 | 0.7 | 0.400519 |
Target: 5'- -uGGuG-UCuGCCaACGGCCCGCAGCGUg -3' miRNA: 3'- ccCCuCuAG-UGG-UGCUGGGCGUCGCG- -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 69480 | 0.71 | 0.366707 |
Target: 5'- cGGGGAGuuga-CACGAuuCCUGguGCGCg -3' miRNA: 3'- -CCCCUCuagugGUGCU--GGGCguCGCG- -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 52357 | 0.71 | 0.350554 |
Target: 5'- -aGGAauGAUCgaACUAgUGGCCCGCGGCGCg -3' miRNA: 3'- ccCCU--CUAG--UGGU-GCUGGGCGUCGCG- -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 67490 | 0.76 | 0.172762 |
Target: 5'- cGGGAcGAuUCugUACGGCCUGCuGCGCg -3' miRNA: 3'- cCCCU-CU-AGugGUGCUGGGCGuCGCG- -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 66978 | 0.78 | 0.133102 |
Target: 5'- cGGGGAcaGUCACguCGGCCUGCAcGCGCg -3' miRNA: 3'- -CCCCUc-UAGUGguGCUGGGCGU-CGCG- -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 32344 | 0.8 | 0.099279 |
Target: 5'- cGGGAGAuuggcgacaucgUCACCGaucCGGCCCGCGGCGa -3' miRNA: 3'- cCCCUCU------------AGUGGU---GCUGGGCGUCGCg -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 24751 | 1.14 | 0.000403 |
Target: 5'- gGGGGAGAUCACCACGACCCGCAGCGCa -3' miRNA: 3'- -CCCCUCUAGUGGUGCUGGGCGUCGCG- -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 17572 | 0.7 | 0.418154 |
Target: 5'- uGGGGcAGugaCGCCGCGGCCa--AGCGCc -3' miRNA: 3'- -CCCC-UCua-GUGGUGCUGGgcgUCGCG- -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 59459 | 0.7 | 0.427147 |
Target: 5'- uGGGGAGGcgUCAgCUACGaaGCCCG-GGUGCa -3' miRNA: 3'- -CCCCUCU--AGU-GGUGC--UGGGCgUCGCG- -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 54693 | 0.67 | 0.580864 |
Target: 5'- -aGGAGAUCGCCugGcuggucuccgugcuGCaCCaGUGGCGCu -3' miRNA: 3'- ccCCUCUAGUGGugC--------------UG-GG-CGUCGCG- -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 37663 | 0.68 | 0.563356 |
Target: 5'- cGGGGcc-UCGCCAgCGGCCgCGCGuCGCu -3' miRNA: 3'- -CCCCucuAGUGGU-GCUGG-GCGUcGCG- -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 60458 | 0.68 | 0.532829 |
Target: 5'- aGGGcGGAUCGCUagcgACGaACCCGagcuuGCGCa -3' miRNA: 3'- -CCCcUCUAGUGG----UGC-UGGGCgu---CGCG- -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 17748 | 0.68 | 0.522782 |
Target: 5'- --cGAGGUCGCCAagGGCCaggaGCAGgGCg -3' miRNA: 3'- cccCUCUAGUGGUg-CUGGg---CGUCgCG- -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 46884 | 0.69 | 0.493105 |
Target: 5'- gGGuGGAGuUCACCGucuucgGGCUCGCGGCGa -3' miRNA: 3'- -CC-CCUCuAGUGGUg-----CUGGGCGUCGCg -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 69182 | 0.69 | 0.483384 |
Target: 5'- -uGGAGAUCAUCugGuCuuGCGGCa- -3' miRNA: 3'- ccCCUCUAGUGGugCuGggCGUCGcg -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 6395 | 0.69 | 0.473756 |
Target: 5'- gGGGGAGGagGCCcCGGCgCCGaAGCGa -3' miRNA: 3'- -CCCCUCUagUGGuGCUG-GGCgUCGCg -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 44723 | 0.69 | 0.454795 |
Target: 5'- -----cGUCACCACcACCUGCGGCGCc -3' miRNA: 3'- ccccucUAGUGGUGcUGGGCGUCGCG- -5' |
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18420 | 3' | -58.5 | NC_004681.1 | + | 40493 | 0.66 | 0.677598 |
Target: 5'- gGGuGGAGAcaccgGCCACG-CUgGCGGUGCc -3' miRNA: 3'- -CC-CCUCUag---UGGUGCuGGgCGUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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