miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18420 3' -58.5 NC_004681.1 + 1543 0.78 0.133102
Target:  5'- gGGGGAcuuGAUgACCcCG-CCCGCGGCGCc -3'
miRNA:   3'- -CCCCU---CUAgUGGuGCuGGGCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 28610 0.68 0.532829
Target:  5'- -uGGAGAUgACCGCGgggguGCCCGgGGUGa -3'
miRNA:   3'- ccCCUCUAgUGGUGC-----UGGGCgUCGCg -5'
18420 3' -58.5 NC_004681.1 + 68629 0.68 0.550062
Target:  5'- cGGGGAGAacCACCggcauggcgcccagGCGugCCGCgAGC-Ca -3'
miRNA:   3'- -CCCCUCUa-GUGG--------------UGCugGGCG-UCGcG- -5'
18420 3' -58.5 NC_004681.1 + 40493 0.66 0.677598
Target:  5'- gGGuGGAGAcaccgGCCACG-CUgGCGGUGCc -3'
miRNA:   3'- -CC-CCUCUag---UGGUGCuGGgCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 50774 0.73 0.298073
Target:  5'- aGGGGGGUCAuguCCccggugcgguagGCGuCUCGCAGCGCu -3'
miRNA:   3'- cCCCUCUAGU---GG------------UGCuGGGCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 36876 0.7 0.400519
Target:  5'- cGGGGGGcggGCCAgCGGCCUGgCAGaCGCg -3'
miRNA:   3'- -CCCCUCuagUGGU-GCUGGGC-GUC-GCG- -5'
18420 3' -58.5 NC_004681.1 + 20035 0.7 0.44547
Target:  5'- cGGGGAG--CACCugcguguugaGCaGGCCCGCGGUGg -3'
miRNA:   3'- -CCCCUCuaGUGG----------UG-CUGGGCGUCGCg -5'
18420 3' -58.5 NC_004681.1 + 36929 0.69 0.454795
Target:  5'- ----cGAUUcugcgaagcaGCCACGGCCCGCGGCGa -3'
miRNA:   3'- ccccuCUAG----------UGGUGCUGGGCGUCGCg -5'
18420 3' -58.5 NC_004681.1 + 44693 0.68 0.512809
Target:  5'- cGGGGuGAguagUGCgGCGGCCgCG-AGCGCg -3'
miRNA:   3'- -CCCCuCUa---GUGgUGCUGG-GCgUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 40266 0.68 0.522782
Target:  5'- cGGGucuaucucAUCGCCuCGAUCUGCGGCGUc -3'
miRNA:   3'- cCCCuc------UAGUGGuGCUGGGCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 16379 0.68 0.518783
Target:  5'- cGGGGAGcugguagcccugCGCCugGuccaccguguACUCGCGGUGCu -3'
miRNA:   3'- -CCCCUCua----------GUGGugC----------UGGGCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 4232 0.69 0.483384
Target:  5'- uGGGGuuGUUgcggGCCucaGCGGCCUGCuuGCGCa -3'
miRNA:   3'- -CCCCucUAG----UGG---UGCUGGGCGu-CGCG- -5'
18420 3' -58.5 NC_004681.1 + 41000 0.77 0.147847
Target:  5'- gGGGGuGGUCACCAUGAUgagCGCGGCGa -3'
miRNA:   3'- -CCCCuCUAGUGGUGCUGg--GCGUCGCg -5'
18420 3' -58.5 NC_004681.1 + 36536 0.68 0.522782
Target:  5'- gGGGGAGAggaaGCgaugaGCGACCCgGUAacccGCGCa -3'
miRNA:   3'- -CCCCUCUag--UGg----UGCUGGG-CGU----CGCG- -5'
18420 3' -58.5 NC_004681.1 + 46931 0.76 0.191393
Target:  5'- cGGGGcGGUUGCCGCGGggcugcguCUCGUAGCGCu -3'
miRNA:   3'- -CCCCuCUAGUGGUGCU--------GGGCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 12979 0.69 0.483384
Target:  5'- uGGGuGuGGUCACCcgcaGCGG-CCGUAGUGCc -3'
miRNA:   3'- -CCC-CuCUAGUGG----UGCUgGGCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 54836 0.68 0.522782
Target:  5'- cGGGGGccuGGUCAUCGuCGGagaCGUAGCGCc -3'
miRNA:   3'- -CCCCU---CUAGUGGU-GCUgg-GCGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 56535 0.68 0.549043
Target:  5'- uGGGuGAcGAUgACCucGCGGCCCGCcuccaacagguguGCGCu -3'
miRNA:   3'- -CCC-CU-CUAgUGG--UGCUGGGCGu------------CGCG- -5'
18420 3' -58.5 NC_004681.1 + 39363 0.75 0.199833
Target:  5'- cGGGGAGuacuugaCGCgGCGGCCCuuggcgcccuugccGCGGCGCa -3'
miRNA:   3'- -CCCCUCua-----GUGgUGCUGGG--------------CGUCGCG- -5'
18420 3' -58.5 NC_004681.1 + 40218 0.7 0.409277
Target:  5'- cGGGcGGUCACCgaccugGCGAccCCCGgGGUGCa -3'
miRNA:   3'- cCCCuCUAGUGG------UGCU--GGGCgUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.