miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18420 5' -56.6 NC_004681.1 + 8624 0.66 0.745066
Target:  5'- cUGGCcgaugGCCGCGGggGcggUCUCAccGUCCGc -3'
miRNA:   3'- -ACCG-----CGGUGCCuuUa--AGGGUa-CGGGC- -5'
18420 5' -56.6 NC_004681.1 + 39212 0.66 0.745066
Target:  5'- cGGCgGUCGCGGAAGg--UguUGCCCGc -3'
miRNA:   3'- aCCG-CGGUGCCUUUaagGguACGGGC- -5'
18420 5' -56.6 NC_004681.1 + 28595 0.66 0.734874
Target:  5'- gGGUGCC-CGGGgugAGUgugagCCCA-GCCCc -3'
miRNA:   3'- aCCGCGGuGCCU---UUAa----GGGUaCGGGc -5'
18420 5' -56.6 NC_004681.1 + 13904 0.66 0.734874
Target:  5'- aGGcCGCCACGGucaacGAGUUgcgucuacUCCGUGCCg- -3'
miRNA:   3'- aCC-GCGGUGCC-----UUUAA--------GGGUACGGgc -5'
18420 5' -56.6 NC_004681.1 + 30816 0.66 0.724585
Target:  5'- --aCGCCACGGccugggCCUAccUGCCCGg -3'
miRNA:   3'- accGCGGUGCCuuuaa-GGGU--ACGGGC- -5'
18420 5' -56.6 NC_004681.1 + 65001 0.66 0.724585
Target:  5'- gGGCGCCGCGGGAGag---AUGCCa- -3'
miRNA:   3'- aCCGCGGUGCCUUUaagggUACGGgc -5'
18420 5' -56.6 NC_004681.1 + 58520 0.66 0.714209
Target:  5'- uUGGCgucgGCCGCGGAGAaggugcgggacUUCU--UGCCCa -3'
miRNA:   3'- -ACCG----CGGUGCCUUU-----------AAGGguACGGGc -5'
18420 5' -56.6 NC_004681.1 + 39178 0.66 0.714209
Target:  5'- cGG-GCCGCGGAGAUgCUC--GCCCu -3'
miRNA:   3'- aCCgCGGUGCCUUUAaGGGuaCGGGc -5'
18420 5' -56.6 NC_004681.1 + 23437 0.66 0.712124
Target:  5'- gGGCGCCugaagcugcCGGAAGagguggCCCAgaagcgaauucgGCCCGa -3'
miRNA:   3'- aCCGCGGu--------GCCUUUaa----GGGUa-----------CGGGC- -5'
18420 5' -56.6 NC_004681.1 + 27408 0.66 0.703757
Target:  5'- cGuGCGCCACGGugauGUUCaCCGcgauggacGCCCa -3'
miRNA:   3'- aC-CGCGGUGCCuu--UAAG-GGUa-------CGGGc -5'
18420 5' -56.6 NC_004681.1 + 6382 0.66 0.703757
Target:  5'- aUGGCGCUgucgaGgGGGAGgaggCCCcgGCgCCGa -3'
miRNA:   3'- -ACCGCGG-----UgCCUUUaa--GGGuaCG-GGC- -5'
18420 5' -56.6 NC_004681.1 + 7148 0.66 0.697453
Target:  5'- aUGGCGCCGCGGucGUUCaugaacgcgaCggagacggugcugauGUGCCCc -3'
miRNA:   3'- -ACCGCGGUGCCuuUAAGg---------G---------------UACGGGc -5'
18420 5' -56.6 NC_004681.1 + 12296 0.66 0.693238
Target:  5'- cGGCG-CGCGGGGAagCCCGacgccggGUCCGg -3'
miRNA:   3'- aCCGCgGUGCCUUUaaGGGUa------CGGGC- -5'
18420 5' -56.6 NC_004681.1 + 52861 0.66 0.693238
Target:  5'- aGGCugGCCAuCGGccug-CCCGcgUGCCCGa -3'
miRNA:   3'- aCCG--CGGU-GCCuuuaaGGGU--ACGGGC- -5'
18420 5' -56.6 NC_004681.1 + 42273 0.66 0.692183
Target:  5'- aGGCGCCuucACGGccuggaaGAAggCCCA-GCUCGg -3'
miRNA:   3'- aCCGCGG---UGCC-------UUUaaGGGUaCGGGC- -5'
18420 5' -56.6 NC_004681.1 + 32217 0.67 0.682664
Target:  5'- gGGcCGCCGCGGuGAccgcUUCCUggAUGCCgGu -3'
miRNA:   3'- aCC-GCGGUGCCuUU----AAGGG--UACGGgC- -5'
18420 5' -56.6 NC_004681.1 + 34367 0.67 0.672044
Target:  5'- gUGcGCGCUGCGGAAAUccaccCCCAgacgauCCCGa -3'
miRNA:   3'- -AC-CGCGGUGCCUUUAa----GGGUac----GGGC- -5'
18420 5' -56.6 NC_004681.1 + 18055 0.67 0.665654
Target:  5'- -aGCGCCGCGGucuuccgauugUCCC--GCCCGc -3'
miRNA:   3'- acCGCGGUGCCuuua-------AGGGuaCGGGC- -5'
18420 5' -56.6 NC_004681.1 + 32882 0.67 0.661388
Target:  5'- gGGCGCCGaGGuggugUCCCggGUCCu -3'
miRNA:   3'- aCCGCGGUgCCuuua-AGGGuaCGGGc -5'
18420 5' -56.6 NC_004681.1 + 19519 0.67 0.661388
Target:  5'- cGGUGCCGCaGAcgccuGcgUCCuCGUcGCCCGu -3'
miRNA:   3'- aCCGCGGUGcCU-----UuaAGG-GUA-CGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.