miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18420 5' -56.6 NC_004681.1 + 24788 1.08 0.001303
Target:  5'- cUGGCGCCACGGAAAUUCCCAUGCCCGc -3'
miRNA:   3'- -ACCGCGGUGCCUUUAAGGGUACGGGC- -5'
18420 5' -56.6 NC_004681.1 + 18451 0.82 0.087242
Target:  5'- aUGGCGCCAcCGGggGUgaaCCCGaGCCCGc -3'
miRNA:   3'- -ACCGCGGU-GCCuuUAa--GGGUaCGGGC- -5'
18420 5' -56.6 NC_004681.1 + 51223 0.81 0.09747
Target:  5'- cGGcCGUCAUGGAGAUUCUCAaGCCCGa -3'
miRNA:   3'- aCC-GCGGUGCCUUUAAGGGUaCGGGC- -5'
18420 5' -56.6 NC_004681.1 + 34824 0.81 0.102716
Target:  5'- cGGCgGCCgaagcgcGCGGGAAUUCCCAaGCCCGc -3'
miRNA:   3'- aCCG-CGG-------UGCCUUUAAGGGUaCGGGC- -5'
18420 5' -56.6 NC_004681.1 + 18195 0.77 0.191253
Target:  5'- gGGCGCCGaugcCGGGGAUgCCgAUGCCCa -3'
miRNA:   3'- aCCGCGGU----GCCUUUAaGGgUACGGGc -5'
18420 5' -56.6 NC_004681.1 + 55131 0.73 0.316051
Target:  5'- uUGGCGCUACGucaGAAGUUCCCcggGCgCGa -3'
miRNA:   3'- -ACCGCGGUGC---CUUUAAGGGua-CGgGC- -5'
18420 5' -56.6 NC_004681.1 + 38322 0.72 0.363861
Target:  5'- aUGGCGCCgccGCGGGAcgUCUUcgGCCg- -3'
miRNA:   3'- -ACCGCGG---UGCCUUuaAGGGuaCGGgc -5'
18420 5' -56.6 NC_004681.1 + 46780 0.72 0.3723
Target:  5'- cGGCGUCACGGuca-UCCCGcGCgCCGu -3'
miRNA:   3'- aCCGCGGUGCCuuuaAGGGUaCG-GGC- -5'
18420 5' -56.6 NC_004681.1 + 6613 0.72 0.380872
Target:  5'- aGGCGCCGCGGcucggucUUCCCcgaGUCCGu -3'
miRNA:   3'- aCCGCGGUGCCuuu----AAGGGua-CGGGC- -5'
18420 5' -56.6 NC_004681.1 + 41939 0.72 0.389575
Target:  5'- cGGCuCCGCGGAGAUcggCCCGcugcagggaaaUGCCCc -3'
miRNA:   3'- aCCGcGGUGCCUUUAa--GGGU-----------ACGGGc -5'
18420 5' -56.6 NC_004681.1 + 38882 0.7 0.463657
Target:  5'- cUGGCGCCACuGGAGAaggCCA-GCCUGc -3'
miRNA:   3'- -ACCGCGGUG-CCUUUaagGGUaCGGGC- -5'
18420 5' -56.6 NC_004681.1 + 16782 0.7 0.463657
Target:  5'- cGGUGCCugGcGgcAUcCCCGgcaUGCCCGa -3'
miRNA:   3'- aCCGCGGugC-CuuUAaGGGU---ACGGGC- -5'
18420 5' -56.6 NC_004681.1 + 20012 0.7 0.463657
Target:  5'- aGGC-CCGCGGuggccUUCaugCCGUGCCCGg -3'
miRNA:   3'- aCCGcGGUGCCuuu--AAG---GGUACGGGC- -5'
18420 5' -56.6 NC_004681.1 + 12699 0.69 0.523755
Target:  5'- aGGCaccuCCugGGAAGagagCCGUGCCCGg -3'
miRNA:   3'- aCCGc---GGugCCUUUaag-GGUACGGGC- -5'
18420 5' -56.6 NC_004681.1 + 17772 0.69 0.523755
Target:  5'- gGGCGagaaccUCAUGGAGGUUCCgCA-GCCCa -3'
miRNA:   3'- aCCGC------GGUGCCUUUAAGG-GUaCGGGc -5'
18420 5' -56.6 NC_004681.1 + 17938 0.69 0.565429
Target:  5'- gGGCGCC-CGGGuuGGUgaggCCgGUGCCUu -3'
miRNA:   3'- aCCGCGGuGCCU--UUAa---GGgUACGGGc -5'
18420 5' -56.6 NC_004681.1 + 3817 0.68 0.575991
Target:  5'- gUGGCGCUGauGAGAUUCU--UGCCUGg -3'
miRNA:   3'- -ACCGCGGUgcCUUUAAGGguACGGGC- -5'
18420 5' -56.6 NC_004681.1 + 51805 0.68 0.575991
Target:  5'- aGGUuccCCGgGGAGAaUCCCccGCCCGg -3'
miRNA:   3'- aCCGc--GGUgCCUUUaAGGGuaCGGGC- -5'
18420 5' -56.6 NC_004681.1 + 68096 0.68 0.586598
Target:  5'- aGGCGUUcucuuccuuGCGGAugg-CCCA-GCCCGa -3'
miRNA:   3'- aCCGCGG---------UGCCUuuaaGGGUaCGGGC- -5'
18420 5' -56.6 NC_004681.1 + 55171 0.68 0.597241
Target:  5'- cGGCgaaGCCAUGGAucg-CCCGcgacggaaUGCCCa -3'
miRNA:   3'- aCCG---CGGUGCCUuuaaGGGU--------ACGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.