miRNA display CGI


Results 21 - 40 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18420 5' -56.6 NC_004681.1 + 1437 0.68 0.604708
Target:  5'- uUGGCGCCGCGGGcggggucaucAAgUCCCccuacuggcagaucAUGCgCGa -3'
miRNA:   3'- -ACCGCGGUGCCU----------UUaAGGG--------------UACGgGC- -5'
18420 5' -56.6 NC_004681.1 + 33770 0.68 0.607912
Target:  5'- cGGUcacGCgCGCGGAGGUUCgCCAccUGCuCCGu -3'
miRNA:   3'- aCCG---CG-GUGCCUUUAAG-GGU--ACG-GGC- -5'
18420 5' -56.6 NC_004681.1 + 62611 0.68 0.607912
Target:  5'- cGGCuGCCAgGGug---CCCAUGgCCUGg -3'
miRNA:   3'- aCCG-CGGUgCCuuuaaGGGUAC-GGGC- -5'
18420 5' -56.6 NC_004681.1 + 34702 0.68 0.614325
Target:  5'- cGGCGCCuucggugcgggcuUGGGAAUUCCCGcGCgCu -3'
miRNA:   3'- aCCGCGGu------------GCCUUUAAGGGUaCGgGc -5'
18420 5' -56.6 NC_004681.1 + 39011 0.68 0.618603
Target:  5'- aGGCuGCCAUGGAGuugaCCCAcGCCa- -3'
miRNA:   3'- aCCG-CGGUGCCUUuaa-GGGUaCGGgc -5'
18420 5' -56.6 NC_004681.1 + 75506 0.68 0.618603
Target:  5'- cGGC-CgCGCGGAAuucggUCUCGUGCUCGc -3'
miRNA:   3'- aCCGcG-GUGCCUUua---AGGGUACGGGC- -5'
18420 5' -56.6 NC_004681.1 + 37618 0.68 0.629305
Target:  5'- gGGUGUCAucgagaaguCGGggGUgcUCUgAUGCCCGc -3'
miRNA:   3'- aCCGCGGU---------GCCuuUA--AGGgUACGGGC- -5'
18420 5' -56.6 NC_004681.1 + 40240 0.68 0.629305
Target:  5'- cGGCGUCGCGGccug-CCUGU-CCCGg -3'
miRNA:   3'- aCCGCGGUGCCuuuaaGGGUAcGGGC- -5'
18420 5' -56.6 NC_004681.1 + 22186 0.67 0.640009
Target:  5'- cGGCGCUGCaacuuggccacaGGGGAUUCCUgcGCCUu -3'
miRNA:   3'- aCCGCGGUG------------CCUUUAAGGGuaCGGGc -5'
18420 5' -56.6 NC_004681.1 + 14854 0.67 0.650706
Target:  5'- cGGCGUCACGGAAA---CCG-GCCUu -3'
miRNA:   3'- aCCGCGGUGCCUUUaagGGUaCGGGc -5'
18420 5' -56.6 NC_004681.1 + 19519 0.67 0.661388
Target:  5'- cGGUGCCGCaGAcgccuGcgUCCuCGUcGCCCGu -3'
miRNA:   3'- aCCGCGGUGcCU-----UuaAGG-GUA-CGGGC- -5'
18420 5' -56.6 NC_004681.1 + 32882 0.67 0.661388
Target:  5'- gGGCGCCGaGGuggugUCCCggGUCCu -3'
miRNA:   3'- aCCGCGGUgCCuuua-AGGGuaCGGGc -5'
18420 5' -56.6 NC_004681.1 + 18055 0.67 0.665654
Target:  5'- -aGCGCCGCGGucuuccgauugUCCC--GCCCGc -3'
miRNA:   3'- acCGCGGUGCCuuua-------AGGGuaCGGGC- -5'
18420 5' -56.6 NC_004681.1 + 34367 0.67 0.672044
Target:  5'- gUGcGCGCUGCGGAAAUccaccCCCAgacgauCCCGa -3'
miRNA:   3'- -AC-CGCGGUGCCUUUAa----GGGUac----GGGC- -5'
18420 5' -56.6 NC_004681.1 + 32217 0.67 0.682664
Target:  5'- gGGcCGCCGCGGuGAccgcUUCCUggAUGCCgGu -3'
miRNA:   3'- aCC-GCGGUGCCuUU----AAGGG--UACGGgC- -5'
18420 5' -56.6 NC_004681.1 + 42273 0.66 0.692183
Target:  5'- aGGCGCCuucACGGccuggaaGAAggCCCA-GCUCGg -3'
miRNA:   3'- aCCGCGG---UGCC-------UUUaaGGGUaCGGGC- -5'
18420 5' -56.6 NC_004681.1 + 12296 0.66 0.693238
Target:  5'- cGGCG-CGCGGGGAagCCCGacgccggGUCCGg -3'
miRNA:   3'- aCCGCgGUGCCUUUaaGGGUa------CGGGC- -5'
18420 5' -56.6 NC_004681.1 + 52861 0.66 0.693238
Target:  5'- aGGCugGCCAuCGGccug-CCCGcgUGCCCGa -3'
miRNA:   3'- aCCG--CGGU-GCCuuuaaGGGU--ACGGGC- -5'
18420 5' -56.6 NC_004681.1 + 7148 0.66 0.697453
Target:  5'- aUGGCGCCGCGGucGUUCaugaacgcgaCggagacggugcugauGUGCCCc -3'
miRNA:   3'- -ACCGCGGUGCCuuUAAGg---------G---------------UACGGGc -5'
18420 5' -56.6 NC_004681.1 + 6382 0.66 0.703757
Target:  5'- aUGGCGCUgucgaGgGGGAGgaggCCCcgGCgCCGa -3'
miRNA:   3'- -ACCGCGG-----UgCCUUUaa--GGGuaCG-GGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.