Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18420 | 5' | -56.6 | NC_004681.1 | + | 14854 | 0.67 | 0.650706 |
Target: 5'- cGGCGUCACGGAAA---CCG-GCCUu -3' miRNA: 3'- aCCGCGGUGCCUUUaagGGUaCGGGc -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 22186 | 0.67 | 0.640009 |
Target: 5'- cGGCGCUGCaacuuggccacaGGGGAUUCCUgcGCCUu -3' miRNA: 3'- aCCGCGGUG------------CCUUUAAGGGuaCGGGc -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 40240 | 0.68 | 0.629305 |
Target: 5'- cGGCGUCGCGGccug-CCUGU-CCCGg -3' miRNA: 3'- aCCGCGGUGCCuuuaaGGGUAcGGGC- -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 37618 | 0.68 | 0.629305 |
Target: 5'- gGGUGUCAucgagaaguCGGggGUgcUCUgAUGCCCGc -3' miRNA: 3'- aCCGCGGU---------GCCuuUA--AGGgUACGGGC- -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 39011 | 0.68 | 0.618603 |
Target: 5'- aGGCuGCCAUGGAGuugaCCCAcGCCa- -3' miRNA: 3'- aCCG-CGGUGCCUUuaa-GGGUaCGGgc -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 75506 | 0.68 | 0.618603 |
Target: 5'- cGGC-CgCGCGGAAuucggUCUCGUGCUCGc -3' miRNA: 3'- aCCGcG-GUGCCUUua---AGGGUACGGGC- -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 34702 | 0.68 | 0.614325 |
Target: 5'- cGGCGCCuucggugcgggcuUGGGAAUUCCCGcGCgCu -3' miRNA: 3'- aCCGCGGu------------GCCUUUAAGGGUaCGgGc -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 62611 | 0.68 | 0.607912 |
Target: 5'- cGGCuGCCAgGGug---CCCAUGgCCUGg -3' miRNA: 3'- aCCG-CGGUgCCuuuaaGGGUAC-GGGC- -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 33770 | 0.68 | 0.607912 |
Target: 5'- cGGUcacGCgCGCGGAGGUUCgCCAccUGCuCCGu -3' miRNA: 3'- aCCG---CG-GUGCCUUUAAG-GGU--ACG-GGC- -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 1437 | 0.68 | 0.604708 |
Target: 5'- uUGGCGCCGCGGGcggggucaucAAgUCCCccuacuggcagaucAUGCgCGa -3' miRNA: 3'- -ACCGCGGUGCCU----------UUaAGGG--------------UACGgGC- -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 55171 | 0.68 | 0.597241 |
Target: 5'- cGGCgaaGCCAUGGAucg-CCCGcgacggaaUGCCCa -3' miRNA: 3'- aCCG---CGGUGCCUuuaaGGGU--------ACGGGc -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 68096 | 0.68 | 0.586598 |
Target: 5'- aGGCGUUcucuuccuuGCGGAugg-CCCA-GCCCGa -3' miRNA: 3'- aCCGCGG---------UGCCUuuaaGGGUaCGGGC- -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 3817 | 0.68 | 0.575991 |
Target: 5'- gUGGCGCUGauGAGAUUCU--UGCCUGg -3' miRNA: 3'- -ACCGCGGUgcCUUUAAGGguACGGGC- -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 51805 | 0.68 | 0.575991 |
Target: 5'- aGGUuccCCGgGGAGAaUCCCccGCCCGg -3' miRNA: 3'- aCCGc--GGUgCCUUUaAGGGuaCGGGC- -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 17938 | 0.69 | 0.565429 |
Target: 5'- gGGCGCC-CGGGuuGGUgaggCCgGUGCCUu -3' miRNA: 3'- aCCGCGGuGCCU--UUAa---GGgUACGGGc -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 17772 | 0.69 | 0.523755 |
Target: 5'- gGGCGagaaccUCAUGGAGGUUCCgCA-GCCCa -3' miRNA: 3'- aCCGC------GGUGCCUUUAAGG-GUaCGGGc -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 12699 | 0.69 | 0.523755 |
Target: 5'- aGGCaccuCCugGGAAGagagCCGUGCCCGg -3' miRNA: 3'- aCCGc---GGugCCUUUaag-GGUACGGGC- -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 20012 | 0.7 | 0.463657 |
Target: 5'- aGGC-CCGCGGuggccUUCaugCCGUGCCCGg -3' miRNA: 3'- aCCGcGGUGCCuuu--AAG---GGUACGGGC- -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 16782 | 0.7 | 0.463657 |
Target: 5'- cGGUGCCugGcGgcAUcCCCGgcaUGCCCGa -3' miRNA: 3'- aCCGCGGugC-CuuUAaGGGU---ACGGGC- -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 38882 | 0.7 | 0.463657 |
Target: 5'- cUGGCGCCACuGGAGAaggCCA-GCCUGc -3' miRNA: 3'- -ACCGCGGUG-CCUUUaagGGUaCGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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