miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18420 5' -56.6 NC_004681.1 + 1437 0.68 0.604708
Target:  5'- uUGGCGCCGCGGGcggggucaucAAgUCCCccuacuggcagaucAUGCgCGa -3'
miRNA:   3'- -ACCGCGGUGCCU----------UUaAGGG--------------UACGgGC- -5'
18420 5' -56.6 NC_004681.1 + 3817 0.68 0.575991
Target:  5'- gUGGCGCUGauGAGAUUCU--UGCCUGg -3'
miRNA:   3'- -ACCGCGGUgcCUUUAAGGguACGGGC- -5'
18420 5' -56.6 NC_004681.1 + 6382 0.66 0.703757
Target:  5'- aUGGCGCUgucgaGgGGGAGgaggCCCcgGCgCCGa -3'
miRNA:   3'- -ACCGCGG-----UgCCUUUaa--GGGuaCG-GGC- -5'
18420 5' -56.6 NC_004681.1 + 6613 0.72 0.380872
Target:  5'- aGGCGCCGCGGcucggucUUCCCcgaGUCCGu -3'
miRNA:   3'- aCCGCGGUGCCuuu----AAGGGua-CGGGC- -5'
18420 5' -56.6 NC_004681.1 + 7148 0.66 0.697453
Target:  5'- aUGGCGCCGCGGucGUUCaugaacgcgaCggagacggugcugauGUGCCCc -3'
miRNA:   3'- -ACCGCGGUGCCuuUAAGg---------G---------------UACGGGc -5'
18420 5' -56.6 NC_004681.1 + 8624 0.66 0.745066
Target:  5'- cUGGCcgaugGCCGCGGggGcggUCUCAccGUCCGc -3'
miRNA:   3'- -ACCG-----CGGUGCCuuUa--AGGGUa-CGGGC- -5'
18420 5' -56.6 NC_004681.1 + 12296 0.66 0.693238
Target:  5'- cGGCG-CGCGGGGAagCCCGacgccggGUCCGg -3'
miRNA:   3'- aCCGCgGUGCCUUUaaGGGUa------CGGGC- -5'
18420 5' -56.6 NC_004681.1 + 12699 0.69 0.523755
Target:  5'- aGGCaccuCCugGGAAGagagCCGUGCCCGg -3'
miRNA:   3'- aCCGc---GGugCCUUUaag-GGUACGGGC- -5'
18420 5' -56.6 NC_004681.1 + 13904 0.66 0.734874
Target:  5'- aGGcCGCCACGGucaacGAGUUgcgucuacUCCGUGCCg- -3'
miRNA:   3'- aCC-GCGGUGCC-----UUUAA--------GGGUACGGgc -5'
18420 5' -56.6 NC_004681.1 + 14854 0.67 0.650706
Target:  5'- cGGCGUCACGGAAA---CCG-GCCUu -3'
miRNA:   3'- aCCGCGGUGCCUUUaagGGUaCGGGc -5'
18420 5' -56.6 NC_004681.1 + 16782 0.7 0.463657
Target:  5'- cGGUGCCugGcGgcAUcCCCGgcaUGCCCGa -3'
miRNA:   3'- aCCGCGGugC-CuuUAaGGGU---ACGGGC- -5'
18420 5' -56.6 NC_004681.1 + 17772 0.69 0.523755
Target:  5'- gGGCGagaaccUCAUGGAGGUUCCgCA-GCCCa -3'
miRNA:   3'- aCCGC------GGUGCCUUUAAGG-GUaCGGGc -5'
18420 5' -56.6 NC_004681.1 + 17938 0.69 0.565429
Target:  5'- gGGCGCC-CGGGuuGGUgaggCCgGUGCCUu -3'
miRNA:   3'- aCCGCGGuGCCU--UUAa---GGgUACGGGc -5'
18420 5' -56.6 NC_004681.1 + 18055 0.67 0.665654
Target:  5'- -aGCGCCGCGGucuuccgauugUCCC--GCCCGc -3'
miRNA:   3'- acCGCGGUGCCuuua-------AGGGuaCGGGC- -5'
18420 5' -56.6 NC_004681.1 + 18195 0.77 0.191253
Target:  5'- gGGCGCCGaugcCGGGGAUgCCgAUGCCCa -3'
miRNA:   3'- aCCGCGGU----GCCUUUAaGGgUACGGGc -5'
18420 5' -56.6 NC_004681.1 + 18451 0.82 0.087242
Target:  5'- aUGGCGCCAcCGGggGUgaaCCCGaGCCCGc -3'
miRNA:   3'- -ACCGCGGU-GCCuuUAa--GGGUaCGGGC- -5'
18420 5' -56.6 NC_004681.1 + 19519 0.67 0.661388
Target:  5'- cGGUGCCGCaGAcgccuGcgUCCuCGUcGCCCGu -3'
miRNA:   3'- aCCGCGGUGcCU-----UuaAGG-GUA-CGGGC- -5'
18420 5' -56.6 NC_004681.1 + 20012 0.7 0.463657
Target:  5'- aGGC-CCGCGGuggccUUCaugCCGUGCCCGg -3'
miRNA:   3'- aCCGcGGUGCCuuu--AAG---GGUACGGGC- -5'
18420 5' -56.6 NC_004681.1 + 22186 0.67 0.640009
Target:  5'- cGGCGCUGCaacuuggccacaGGGGAUUCCUgcGCCUu -3'
miRNA:   3'- aCCGCGGUG------------CCUUUAAGGGuaCGGGc -5'
18420 5' -56.6 NC_004681.1 + 23437 0.66 0.712124
Target:  5'- gGGCGCCugaagcugcCGGAAGagguggCCCAgaagcgaauucgGCCCGa -3'
miRNA:   3'- aCCGCGGu--------GCCUUUaa----GGGUa-----------CGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.