Results 21 - 40 of 50 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18420 | 5' | -56.6 | NC_004681.1 | + | 24788 | 1.08 | 0.001303 |
Target: 5'- cUGGCGCCACGGAAAUUCCCAUGCCCGc -3' miRNA: 3'- -ACCGCGGUGCCUUUAAGGGUACGGGC- -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 27408 | 0.66 | 0.703757 |
Target: 5'- cGuGCGCCACGGugauGUUCaCCGcgauggacGCCCa -3' miRNA: 3'- aC-CGCGGUGCCuu--UAAG-GGUa-------CGGGc -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 28595 | 0.66 | 0.734874 |
Target: 5'- gGGUGCC-CGGGgugAGUgugagCCCA-GCCCc -3' miRNA: 3'- aCCGCGGuGCCU---UUAa----GGGUaCGGGc -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 30816 | 0.66 | 0.724585 |
Target: 5'- --aCGCCACGGccugggCCUAccUGCCCGg -3' miRNA: 3'- accGCGGUGCCuuuaa-GGGU--ACGGGC- -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 32217 | 0.67 | 0.682664 |
Target: 5'- gGGcCGCCGCGGuGAccgcUUCCUggAUGCCgGu -3' miRNA: 3'- aCC-GCGGUGCCuUU----AAGGG--UACGGgC- -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 32882 | 0.67 | 0.661388 |
Target: 5'- gGGCGCCGaGGuggugUCCCggGUCCu -3' miRNA: 3'- aCCGCGGUgCCuuua-AGGGuaCGGGc -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 33770 | 0.68 | 0.607912 |
Target: 5'- cGGUcacGCgCGCGGAGGUUCgCCAccUGCuCCGu -3' miRNA: 3'- aCCG---CG-GUGCCUUUAAG-GGU--ACG-GGC- -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 34367 | 0.67 | 0.672044 |
Target: 5'- gUGcGCGCUGCGGAAAUccaccCCCAgacgauCCCGa -3' miRNA: 3'- -AC-CGCGGUGCCUUUAa----GGGUac----GGGC- -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 34702 | 0.68 | 0.614325 |
Target: 5'- cGGCGCCuucggugcgggcuUGGGAAUUCCCGcGCgCu -3' miRNA: 3'- aCCGCGGu------------GCCUUUAAGGGUaCGgGc -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 34824 | 0.81 | 0.102716 |
Target: 5'- cGGCgGCCgaagcgcGCGGGAAUUCCCAaGCCCGc -3' miRNA: 3'- aCCG-CGG-------UGCCUUUAAGGGUaCGGGC- -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 37618 | 0.68 | 0.629305 |
Target: 5'- gGGUGUCAucgagaaguCGGggGUgcUCUgAUGCCCGc -3' miRNA: 3'- aCCGCGGU---------GCCuuUA--AGGgUACGGGC- -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 38322 | 0.72 | 0.363861 |
Target: 5'- aUGGCGCCgccGCGGGAcgUCUUcgGCCg- -3' miRNA: 3'- -ACCGCGG---UGCCUUuaAGGGuaCGGgc -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 38882 | 0.7 | 0.463657 |
Target: 5'- cUGGCGCCACuGGAGAaggCCA-GCCUGc -3' miRNA: 3'- -ACCGCGGUG-CCUUUaagGGUaCGGGC- -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 39011 | 0.68 | 0.618603 |
Target: 5'- aGGCuGCCAUGGAGuugaCCCAcGCCa- -3' miRNA: 3'- aCCG-CGGUGCCUUuaa-GGGUaCGGgc -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 39178 | 0.66 | 0.714209 |
Target: 5'- cGG-GCCGCGGAGAUgCUC--GCCCu -3' miRNA: 3'- aCCgCGGUGCCUUUAaGGGuaCGGGc -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 39212 | 0.66 | 0.745066 |
Target: 5'- cGGCgGUCGCGGAAGg--UguUGCCCGc -3' miRNA: 3'- aCCG-CGGUGCCUUUaagGguACGGGC- -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 40240 | 0.68 | 0.629305 |
Target: 5'- cGGCGUCGCGGccug-CCUGU-CCCGg -3' miRNA: 3'- aCCGCGGUGCCuuuaaGGGUAcGGGC- -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 41939 | 0.72 | 0.389575 |
Target: 5'- cGGCuCCGCGGAGAUcggCCCGcugcagggaaaUGCCCc -3' miRNA: 3'- aCCGcGGUGCCUUUAa--GGGU-----------ACGGGc -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 42273 | 0.66 | 0.692183 |
Target: 5'- aGGCGCCuucACGGccuggaaGAAggCCCA-GCUCGg -3' miRNA: 3'- aCCGCGG---UGCC-------UUUaaGGGUaCGGGC- -5' |
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18420 | 5' | -56.6 | NC_004681.1 | + | 46780 | 0.72 | 0.3723 |
Target: 5'- cGGCGUCACGGuca-UCCCGcGCgCCGu -3' miRNA: 3'- aCCGCGGUGCCuuuaAGGGUaCG-GGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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