miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18420 5' -56.6 NC_004681.1 + 75506 0.68 0.618603
Target:  5'- cGGC-CgCGCGGAAuucggUCUCGUGCUCGc -3'
miRNA:   3'- aCCGcG-GUGCCUUua---AGGGUACGGGC- -5'
18420 5' -56.6 NC_004681.1 + 68096 0.68 0.586598
Target:  5'- aGGCGUUcucuuccuuGCGGAugg-CCCA-GCCCGa -3'
miRNA:   3'- aCCGCGG---------UGCCUuuaaGGGUaCGGGC- -5'
18420 5' -56.6 NC_004681.1 + 65001 0.66 0.724585
Target:  5'- gGGCGCCGCGGGAGag---AUGCCa- -3'
miRNA:   3'- aCCGCGGUGCCUUUaagggUACGGgc -5'
18420 5' -56.6 NC_004681.1 + 62611 0.68 0.607912
Target:  5'- cGGCuGCCAgGGug---CCCAUGgCCUGg -3'
miRNA:   3'- aCCG-CGGUgCCuuuaaGGGUAC-GGGC- -5'
18420 5' -56.6 NC_004681.1 + 58520 0.66 0.714209
Target:  5'- uUGGCgucgGCCGCGGAGAaggugcgggacUUCU--UGCCCa -3'
miRNA:   3'- -ACCG----CGGUGCCUUU-----------AAGGguACGGGc -5'
18420 5' -56.6 NC_004681.1 + 55171 0.68 0.597241
Target:  5'- cGGCgaaGCCAUGGAucg-CCCGcgacggaaUGCCCa -3'
miRNA:   3'- aCCG---CGGUGCCUuuaaGGGU--------ACGGGc -5'
18420 5' -56.6 NC_004681.1 + 55131 0.73 0.316051
Target:  5'- uUGGCGCUACGucaGAAGUUCCCcggGCgCGa -3'
miRNA:   3'- -ACCGCGGUGC---CUUUAAGGGua-CGgGC- -5'
18420 5' -56.6 NC_004681.1 + 52861 0.66 0.693238
Target:  5'- aGGCugGCCAuCGGccug-CCCGcgUGCCCGa -3'
miRNA:   3'- aCCG--CGGU-GCCuuuaaGGGU--ACGGGC- -5'
18420 5' -56.6 NC_004681.1 + 51805 0.68 0.575991
Target:  5'- aGGUuccCCGgGGAGAaUCCCccGCCCGg -3'
miRNA:   3'- aCCGc--GGUgCCUUUaAGGGuaCGGGC- -5'
18420 5' -56.6 NC_004681.1 + 51223 0.81 0.09747
Target:  5'- cGGcCGUCAUGGAGAUUCUCAaGCCCGa -3'
miRNA:   3'- aCC-GCGGUGCCUUUAAGGGUaCGGGC- -5'
18420 5' -56.6 NC_004681.1 + 46780 0.72 0.3723
Target:  5'- cGGCGUCACGGuca-UCCCGcGCgCCGu -3'
miRNA:   3'- aCCGCGGUGCCuuuaAGGGUaCG-GGC- -5'
18420 5' -56.6 NC_004681.1 + 42273 0.66 0.692183
Target:  5'- aGGCGCCuucACGGccuggaaGAAggCCCA-GCUCGg -3'
miRNA:   3'- aCCGCGG---UGCC-------UUUaaGGGUaCGGGC- -5'
18420 5' -56.6 NC_004681.1 + 41939 0.72 0.389575
Target:  5'- cGGCuCCGCGGAGAUcggCCCGcugcagggaaaUGCCCc -3'
miRNA:   3'- aCCGcGGUGCCUUUAa--GGGU-----------ACGGGc -5'
18420 5' -56.6 NC_004681.1 + 40240 0.68 0.629305
Target:  5'- cGGCGUCGCGGccug-CCUGU-CCCGg -3'
miRNA:   3'- aCCGCGGUGCCuuuaaGGGUAcGGGC- -5'
18420 5' -56.6 NC_004681.1 + 39212 0.66 0.745066
Target:  5'- cGGCgGUCGCGGAAGg--UguUGCCCGc -3'
miRNA:   3'- aCCG-CGGUGCCUUUaagGguACGGGC- -5'
18420 5' -56.6 NC_004681.1 + 39178 0.66 0.714209
Target:  5'- cGG-GCCGCGGAGAUgCUC--GCCCu -3'
miRNA:   3'- aCCgCGGUGCCUUUAaGGGuaCGGGc -5'
18420 5' -56.6 NC_004681.1 + 39011 0.68 0.618603
Target:  5'- aGGCuGCCAUGGAGuugaCCCAcGCCa- -3'
miRNA:   3'- aCCG-CGGUGCCUUuaa-GGGUaCGGgc -5'
18420 5' -56.6 NC_004681.1 + 38882 0.7 0.463657
Target:  5'- cUGGCGCCACuGGAGAaggCCA-GCCUGc -3'
miRNA:   3'- -ACCGCGGUG-CCUUUaagGGUaCGGGC- -5'
18420 5' -56.6 NC_004681.1 + 38322 0.72 0.363861
Target:  5'- aUGGCGCCgccGCGGGAcgUCUUcgGCCg- -3'
miRNA:   3'- -ACCGCGG---UGCCUUuaAGGGuaCGGgc -5'
18420 5' -56.6 NC_004681.1 + 37618 0.68 0.629305
Target:  5'- gGGUGUCAucgagaaguCGGggGUgcUCUgAUGCCCGc -3'
miRNA:   3'- aCCGCGGU---------GCCuuUA--AGGgUACGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.