miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18420 5' -56.6 NC_004681.1 + 24788 1.08 0.001303
Target:  5'- cUGGCGCCACGGAAAUUCCCAUGCCCGc -3'
miRNA:   3'- -ACCGCGGUGCCUUUAAGGGUACGGGC- -5'
18420 5' -56.6 NC_004681.1 + 18055 0.67 0.665654
Target:  5'- -aGCGCCGCGGucuuccgauugUCCC--GCCCGc -3'
miRNA:   3'- acCGCGGUGCCuuua-------AGGGuaCGGGC- -5'
18420 5' -56.6 NC_004681.1 + 34367 0.67 0.672044
Target:  5'- gUGcGCGCUGCGGAAAUccaccCCCAgacgauCCCGa -3'
miRNA:   3'- -AC-CGCGGUGCCUUUAa----GGGUac----GGGC- -5'
18420 5' -56.6 NC_004681.1 + 42273 0.66 0.692183
Target:  5'- aGGCGCCuucACGGccuggaaGAAggCCCA-GCUCGg -3'
miRNA:   3'- aCCGCGG---UGCC-------UUUaaGGGUaCGGGC- -5'
18420 5' -56.6 NC_004681.1 + 52861 0.66 0.693238
Target:  5'- aGGCugGCCAuCGGccug-CCCGcgUGCCCGa -3'
miRNA:   3'- aCCG--CGGU-GCCuuuaaGGGU--ACGGGC- -5'
18420 5' -56.6 NC_004681.1 + 6382 0.66 0.703757
Target:  5'- aUGGCGCUgucgaGgGGGAGgaggCCCcgGCgCCGa -3'
miRNA:   3'- -ACCGCGG-----UgCCUUUaa--GGGuaCG-GGC- -5'
18420 5' -56.6 NC_004681.1 + 39178 0.66 0.714209
Target:  5'- cGG-GCCGCGGAGAUgCUC--GCCCu -3'
miRNA:   3'- aCCgCGGUGCCUUUAaGGGuaCGGGc -5'
18420 5' -56.6 NC_004681.1 + 30816 0.66 0.724585
Target:  5'- --aCGCCACGGccugggCCUAccUGCCCGg -3'
miRNA:   3'- accGCGGUGCCuuuaa-GGGU--ACGGGC- -5'
18420 5' -56.6 NC_004681.1 + 13904 0.66 0.734874
Target:  5'- aGGcCGCCACGGucaacGAGUUgcgucuacUCCGUGCCg- -3'
miRNA:   3'- aCC-GCGGUGCC-----UUUAA--------GGGUACGGgc -5'
18420 5' -56.6 NC_004681.1 + 32882 0.67 0.661388
Target:  5'- gGGCGCCGaGGuggugUCCCggGUCCu -3'
miRNA:   3'- aCCGCGGUgCCuuua-AGGGuaCGGGc -5'
18420 5' -56.6 NC_004681.1 + 34702 0.68 0.614325
Target:  5'- cGGCGCCuucggugcgggcuUGGGAAUUCCCGcGCgCu -3'
miRNA:   3'- aCCGCGGu------------GCCUUUAAGGGUaCGgGc -5'
18420 5' -56.6 NC_004681.1 + 51223 0.81 0.09747
Target:  5'- cGGcCGUCAUGGAGAUUCUCAaGCCCGa -3'
miRNA:   3'- aCC-GCGGUGCCUUUAAGGGUaCGGGC- -5'
18420 5' -56.6 NC_004681.1 + 46780 0.72 0.3723
Target:  5'- cGGCGUCACGGuca-UCCCGcGCgCCGu -3'
miRNA:   3'- aCCGCGGUGCCuuuaAGGGUaCG-GGC- -5'
18420 5' -56.6 NC_004681.1 + 16782 0.7 0.463657
Target:  5'- cGGUGCCugGcGgcAUcCCCGgcaUGCCCGa -3'
miRNA:   3'- aCCGCGGugC-CuuUAaGGGU---ACGGGC- -5'
18420 5' -56.6 NC_004681.1 + 38882 0.7 0.463657
Target:  5'- cUGGCGCCACuGGAGAaggCCA-GCCUGc -3'
miRNA:   3'- -ACCGCGGUG-CCUUUaagGGUaCGGGC- -5'
18420 5' -56.6 NC_004681.1 + 17772 0.69 0.523755
Target:  5'- gGGCGagaaccUCAUGGAGGUUCCgCA-GCCCa -3'
miRNA:   3'- aCCGC------GGUGCCUUUAAGG-GUaCGGGc -5'
18420 5' -56.6 NC_004681.1 + 3817 0.68 0.575991
Target:  5'- gUGGCGCUGauGAGAUUCU--UGCCUGg -3'
miRNA:   3'- -ACCGCGGUgcCUUUAAGGguACGGGC- -5'
18420 5' -56.6 NC_004681.1 + 55171 0.68 0.597241
Target:  5'- cGGCgaaGCCAUGGAucg-CCCGcgacggaaUGCCCa -3'
miRNA:   3'- aCCG---CGGUGCCUuuaaGGGU--------ACGGGc -5'
18420 5' -56.6 NC_004681.1 + 1437 0.68 0.604708
Target:  5'- uUGGCGCCGCGGGcggggucaucAAgUCCCccuacuggcagaucAUGCgCGa -3'
miRNA:   3'- -ACCGCGGUGCCU----------UUaAGGG--------------UACGgGC- -5'
18420 5' -56.6 NC_004681.1 + 8624 0.66 0.745066
Target:  5'- cUGGCcgaugGCCGCGGggGcggUCUCAccGUCCGc -3'
miRNA:   3'- -ACCG-----CGGUGCCuuUa--AGGGUa-CGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.