miRNA display CGI


Results 21 - 40 of 50 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18420 5' -56.6 NC_004681.1 + 33770 0.68 0.607912
Target:  5'- cGGUcacGCgCGCGGAGGUUCgCCAccUGCuCCGu -3'
miRNA:   3'- aCCG---CG-GUGCCUUUAAG-GGU--ACG-GGC- -5'
18420 5' -56.6 NC_004681.1 + 39011 0.68 0.618603
Target:  5'- aGGCuGCCAUGGAGuugaCCCAcGCCa- -3'
miRNA:   3'- aCCG-CGGUGCCUUuaa-GGGUaCGGgc -5'
18420 5' -56.6 NC_004681.1 + 75506 0.68 0.618603
Target:  5'- cGGC-CgCGCGGAAuucggUCUCGUGCUCGc -3'
miRNA:   3'- aCCGcG-GUGCCUUua---AGGGUACGGGC- -5'
18420 5' -56.6 NC_004681.1 + 37618 0.68 0.629305
Target:  5'- gGGUGUCAucgagaaguCGGggGUgcUCUgAUGCCCGc -3'
miRNA:   3'- aCCGCGGU---------GCCuuUA--AGGgUACGGGC- -5'
18420 5' -56.6 NC_004681.1 + 40240 0.68 0.629305
Target:  5'- cGGCGUCGCGGccug-CCUGU-CCCGg -3'
miRNA:   3'- aCCGCGGUGCCuuuaaGGGUAcGGGC- -5'
18420 5' -56.6 NC_004681.1 + 22186 0.67 0.640009
Target:  5'- cGGCGCUGCaacuuggccacaGGGGAUUCCUgcGCCUu -3'
miRNA:   3'- aCCGCGGUG------------CCUUUAAGGGuaCGGGc -5'
18420 5' -56.6 NC_004681.1 + 14854 0.67 0.650706
Target:  5'- cGGCGUCACGGAAA---CCG-GCCUu -3'
miRNA:   3'- aCCGCGGUGCCUUUaagGGUaCGGGc -5'
18420 5' -56.6 NC_004681.1 + 19519 0.67 0.661388
Target:  5'- cGGUGCCGCaGAcgccuGcgUCCuCGUcGCCCGu -3'
miRNA:   3'- aCCGCGGUGcCU-----UuaAGG-GUA-CGGGC- -5'
18420 5' -56.6 NC_004681.1 + 32217 0.67 0.682664
Target:  5'- gGGcCGCCGCGGuGAccgcUUCCUggAUGCCgGu -3'
miRNA:   3'- aCC-GCGGUGCCuUU----AAGGG--UACGGgC- -5'
18420 5' -56.6 NC_004681.1 + 68096 0.68 0.586598
Target:  5'- aGGCGUUcucuuccuuGCGGAugg-CCCA-GCCCGa -3'
miRNA:   3'- aCCGCGG---------UGCCUuuaaGGGUaCGGGC- -5'
18420 5' -56.6 NC_004681.1 + 51805 0.68 0.575991
Target:  5'- aGGUuccCCGgGGAGAaUCCCccGCCCGg -3'
miRNA:   3'- aCCGc--GGUgCCUUUaAGGGuaCGGGC- -5'
18420 5' -56.6 NC_004681.1 + 34824 0.81 0.102716
Target:  5'- cGGCgGCCgaagcgcGCGGGAAUUCCCAaGCCCGc -3'
miRNA:   3'- aCCG-CGG-------UGCCUUUAAGGGUaCGGGC- -5'
18420 5' -56.6 NC_004681.1 + 18195 0.77 0.191253
Target:  5'- gGGCGCCGaugcCGGGGAUgCCgAUGCCCa -3'
miRNA:   3'- aCCGCGGU----GCCUUUAaGGgUACGGGc -5'
18420 5' -56.6 NC_004681.1 + 55131 0.73 0.316051
Target:  5'- uUGGCGCUACGucaGAAGUUCCCcggGCgCGa -3'
miRNA:   3'- -ACCGCGGUGC---CUUUAAGGGua-CGgGC- -5'
18420 5' -56.6 NC_004681.1 + 38322 0.72 0.363861
Target:  5'- aUGGCGCCgccGCGGGAcgUCUUcgGCCg- -3'
miRNA:   3'- -ACCGCGG---UGCCUUuaAGGGuaCGGgc -5'
18420 5' -56.6 NC_004681.1 + 6613 0.72 0.380872
Target:  5'- aGGCGCCGCGGcucggucUUCCCcgaGUCCGu -3'
miRNA:   3'- aCCGCGGUGCCuuu----AAGGGua-CGGGC- -5'
18420 5' -56.6 NC_004681.1 + 41939 0.72 0.389575
Target:  5'- cGGCuCCGCGGAGAUcggCCCGcugcagggaaaUGCCCc -3'
miRNA:   3'- aCCGcGGUGCCUUUAa--GGGU-----------ACGGGc -5'
18420 5' -56.6 NC_004681.1 + 20012 0.7 0.463657
Target:  5'- aGGC-CCGCGGuggccUUCaugCCGUGCCCGg -3'
miRNA:   3'- aCCGcGGUGCCuuu--AAG---GGUACGGGC- -5'
18420 5' -56.6 NC_004681.1 + 12699 0.69 0.523755
Target:  5'- aGGCaccuCCugGGAAGagagCCGUGCCCGg -3'
miRNA:   3'- aCCGc---GGugCCUUUaag-GGUACGGGC- -5'
18420 5' -56.6 NC_004681.1 + 17938 0.69 0.565429
Target:  5'- gGGCGCC-CGGGuuGGUgaggCCgGUGCCUu -3'
miRNA:   3'- aCCGCGGuGCCU--UUAa---GGgUACGGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.