miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18423 5' -58.7 NC_004681.1 + 54457 0.66 0.645542
Target:  5'- gGUGGC-GAGGcGUgcccacuugcgcagGUacuuaGGCCACAGGuGGg -3'
miRNA:   3'- gCACCGuCUCC-CA--------------UA-----CCGGUGUCC-CC- -5'
18423 5' -58.7 NC_004681.1 + 8649 0.66 0.624537
Target:  5'- --aGGUacccgucgaaccgaAG-GGGUucuggccgAUGGCCGCGGGGGc -3'
miRNA:   3'- gcaCCG--------------UCuCCCA--------UACCGGUGUCCCC- -5'
18423 5' -58.7 NC_004681.1 + 50915 0.66 0.596231
Target:  5'- gGUGGCGGuGGGcggGGUCACAGu-- -3'
miRNA:   3'- gCACCGUCuCCCauaCCGGUGUCccc -5'
18423 5' -58.7 NC_004681.1 + 41698 0.67 0.534257
Target:  5'- uCGUGGCGGAGGaGUucguucaucgccGUGcGCUGCcugcGGGGu -3'
miRNA:   3'- -GCACCGUCUCC-CA------------UAC-CGGUGu---CCCC- -5'
18423 5' -58.7 NC_004681.1 + 39342 0.68 0.52413
Target:  5'- --cGGCuccGAGGGgccgcuguggAUcGGCCugGGGGGa -3'
miRNA:   3'- gcaCCGu--CUCCCa---------UA-CCGGugUCCCC- -5'
18423 5' -58.7 NC_004681.1 + 49884 0.68 0.514078
Target:  5'- cCGUGGCAGcccuuGGUgccGUGGCCGCAGa-- -3'
miRNA:   3'- -GCACCGUCuc---CCA---UACCGGUGUCccc -5'
18423 5' -58.7 NC_004681.1 + 1870 0.68 0.514078
Target:  5'- --cGGUgaGGAGGGcgAUGGCCu--GGGGa -3'
miRNA:   3'- gcaCCG--UCUCCCa-UACCGGuguCCCC- -5'
18423 5' -58.7 NC_004681.1 + 36237 0.68 0.494217
Target:  5'- gCG-GGCAGAGGcUAUgaacucGGCCACuGGGa -3'
miRNA:   3'- -GCaCCGUCUCCcAUA------CCGGUGuCCCc -5'
18423 5' -58.7 NC_004681.1 + 49802 0.69 0.442475
Target:  5'- gGUGGUGGAGGGUGagggggagguagaGGCCGCAGa-- -3'
miRNA:   3'- gCACCGUCUCCCAUa------------CCGGUGUCccc -5'
18423 5' -58.7 NC_004681.1 + 29284 0.7 0.40973
Target:  5'- aCGUG--AGAGGGauugugAUGGCCGCccAGGGGu -3'
miRNA:   3'- -GCACcgUCUCCCa-----UACCGGUG--UCCCC- -5'
18423 5' -58.7 NC_004681.1 + 18099 0.7 0.40442
Target:  5'- cCGUGGCAuccGGGGuGUgcgugaucagcgggaGUGGCCGCAuGGGc -3'
miRNA:   3'- -GCACCGU---CUCC-CA---------------UACCGGUGUcCCC- -5'
18423 5' -58.7 NC_004681.1 + 59458 0.7 0.400905
Target:  5'- uCGgGaGCAGAGGGUggGGCCAgugacUAGGGc -3'
miRNA:   3'- -GCaC-CGUCUCCCAuaCCGGU-----GUCCCc -5'
18423 5' -58.7 NC_004681.1 + 12385 0.72 0.29775
Target:  5'- cCGU-GCcGAGGGUu--GCCACAGGGGc -3'
miRNA:   3'- -GCAcCGuCUCCCAuacCGGUGUCCCC- -5'
18423 5' -58.7 NC_004681.1 + 25659 1.09 0.00072
Target:  5'- uCGUGGCAGAGGGUAUGGCCACAGGGGc -3'
miRNA:   3'- -GCACCGUCUCCCAUACCGGUGUCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.