Results 1 - 14 of 14 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18423 | 5' | -58.7 | NC_004681.1 | + | 25659 | 1.09 | 0.00072 |
Target: 5'- uCGUGGCAGAGGGUAUGGCCACAGGGGc -3' miRNA: 3'- -GCACCGUCUCCCAUACCGGUGUCCCC- -5' |
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18423 | 5' | -58.7 | NC_004681.1 | + | 12385 | 0.72 | 0.29775 |
Target: 5'- cCGU-GCcGAGGGUu--GCCACAGGGGc -3' miRNA: 3'- -GCAcCGuCUCCCAuacCGGUGUCCCC- -5' |
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18423 | 5' | -58.7 | NC_004681.1 | + | 29284 | 0.7 | 0.40973 |
Target: 5'- aCGUG--AGAGGGauugugAUGGCCGCccAGGGGu -3' miRNA: 3'- -GCACcgUCUCCCa-----UACCGGUG--UCCCC- -5' |
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18423 | 5' | -58.7 | NC_004681.1 | + | 59458 | 0.7 | 0.400905 |
Target: 5'- uCGgGaGCAGAGGGUggGGCCAgugacUAGGGc -3' miRNA: 3'- -GCaC-CGUCUCCCAuaCCGGU-----GUCCCc -5' |
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18423 | 5' | -58.7 | NC_004681.1 | + | 18099 | 0.7 | 0.40442 |
Target: 5'- cCGUGGCAuccGGGGuGUgcgugaucagcgggaGUGGCCGCAuGGGc -3' miRNA: 3'- -GCACCGU---CUCC-CA---------------UACCGGUGUcCCC- -5' |
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18423 | 5' | -58.7 | NC_004681.1 | + | 49802 | 0.69 | 0.442475 |
Target: 5'- gGUGGUGGAGGGUGagggggagguagaGGCCGCAGa-- -3' miRNA: 3'- gCACCGUCUCCCAUa------------CCGGUGUCccc -5' |
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18423 | 5' | -58.7 | NC_004681.1 | + | 39342 | 0.68 | 0.52413 |
Target: 5'- --cGGCuccGAGGGgccgcuguggAUcGGCCugGGGGGa -3' miRNA: 3'- gcaCCGu--CUCCCa---------UA-CCGGugUCCCC- -5' |
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18423 | 5' | -58.7 | NC_004681.1 | + | 36237 | 0.68 | 0.494217 |
Target: 5'- gCG-GGCAGAGGcUAUgaacucGGCCACuGGGa -3' miRNA: 3'- -GCaCCGUCUCCcAUA------CCGGUGuCCCc -5' |
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18423 | 5' | -58.7 | NC_004681.1 | + | 1870 | 0.68 | 0.514078 |
Target: 5'- --cGGUgaGGAGGGcgAUGGCCu--GGGGa -3' miRNA: 3'- gcaCCG--UCUCCCa-UACCGGuguCCCC- -5' |
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18423 | 5' | -58.7 | NC_004681.1 | + | 49884 | 0.68 | 0.514078 |
Target: 5'- cCGUGGCAGcccuuGGUgccGUGGCCGCAGa-- -3' miRNA: 3'- -GCACCGUCuc---CCA---UACCGGUGUCccc -5' |
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18423 | 5' | -58.7 | NC_004681.1 | + | 41698 | 0.67 | 0.534257 |
Target: 5'- uCGUGGCGGAGGaGUucguucaucgccGUGcGCUGCcugcGGGGu -3' miRNA: 3'- -GCACCGUCUCC-CA------------UAC-CGGUGu---CCCC- -5' |
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18423 | 5' | -58.7 | NC_004681.1 | + | 50915 | 0.66 | 0.596231 |
Target: 5'- gGUGGCGGuGGGcggGGUCACAGu-- -3' miRNA: 3'- gCACCGUCuCCCauaCCGGUGUCccc -5' |
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18423 | 5' | -58.7 | NC_004681.1 | + | 8649 | 0.66 | 0.624537 |
Target: 5'- --aGGUacccgucgaaccgaAG-GGGUucuggccgAUGGCCGCGGGGGc -3' miRNA: 3'- gcaCCG--------------UCuCCCA--------UACCGGUGUCCCC- -5' |
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18423 | 5' | -58.7 | NC_004681.1 | + | 54457 | 0.66 | 0.645542 |
Target: 5'- gGUGGC-GAGGcGUgcccacuugcgcagGUacuuaGGCCACAGGuGGg -3' miRNA: 3'- gCACCGuCUCC-CA--------------UA-----CCGGUGUCC-CC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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