Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18424 | 3' | -56.8 | NC_004681.1 | + | 25286 | 0.66 | 0.699278 |
Target: 5'- gCCa--GCGCCGCCAGGGgccugACcggGGCcACu -3' miRNA: 3'- -GGaagCGCGGCGGUCUCa----UG---CCGaUG- -5' |
|||||||
18424 | 3' | -56.8 | NC_004681.1 | + | 1181 | 0.66 | 0.709694 |
Target: 5'- gCCUugaggcgcUCGCGCUGCCAGGGcuccaucgGGCcgUACa -3' miRNA: 3'- -GGA--------AGCGCGGCGGUCUCaug-----CCG--AUG- -5' |
|||||||
18424 | 3' | -56.8 | NC_004681.1 | + | 6577 | 0.66 | 0.709694 |
Target: 5'- aCCUgCGCGCCGUCAagggcgccauGGGccGCGGCa-- -3' miRNA: 3'- -GGAaGCGCGGCGGU----------CUCa-UGCCGaug -5' |
|||||||
18424 | 3' | -56.8 | NC_004681.1 | + | 6787 | 0.66 | 0.730302 |
Target: 5'- uCCUUC-CGCUcgGCC--AGUGCGaGCUGCa -3' miRNA: 3'- -GGAAGcGCGG--CGGucUCAUGC-CGAUG- -5' |
|||||||
18424 | 3' | -56.8 | NC_004681.1 | + | 57807 | 0.66 | 0.730302 |
Target: 5'- ---cCGCGCCGCCgagguggcgaaGGAGcGgGGCUGg -3' miRNA: 3'- ggaaGCGCGGCGG-----------UCUCaUgCCGAUg -5' |
|||||||
18424 | 3' | -56.8 | NC_004681.1 | + | 40564 | 0.66 | 0.730302 |
Target: 5'- aCCga-GCGUCGCC-GAGgcaaACGGCgACa -3' miRNA: 3'- -GGaagCGCGGCGGuCUCa---UGCCGaUG- -5' |
|||||||
18424 | 3' | -56.8 | NC_004681.1 | + | 28921 | 0.66 | 0.749541 |
Target: 5'- gCCU--GCGCCuGCCAGucGGUAUaugacgaGGCUGCc -3' miRNA: 3'- -GGAagCGCGG-CGGUC--UCAUG-------CCGAUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home