Results 21 - 27 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 18424 | 3' | -56.8 | NC_004681.1 | + | 60672 | 0.7 | 0.4804 |
|
Target: 5'- ---aCGCGCCGCUcGugauGGUGCGGuCUACg -3' miRNA: 3'- ggaaGCGCGGCGGuC----UCAUGCC-GAUG- -5' |
|||||||
| 18424 | 3' | -56.8 | NC_004681.1 | + | 75520 | 0.7 | 0.470614 |
|
Target: 5'- ---cUGCGCCGC--GAGUACGGCcGCg -3' miRNA: 3'- ggaaGCGCGGCGguCUCAUGCCGaUG- -5' |
|||||||
| 18424 | 3' | -56.8 | NC_004681.1 | + | 61747 | 0.7 | 0.46093 |
|
Target: 5'- cCCUcgCGCGCCaCCAGAccGCGGCcGCc -3' miRNA: 3'- -GGAa-GCGCGGcGGUCUcaUGCCGaUG- -5' |
|||||||
| 18424 | 3' | -56.8 | NC_004681.1 | + | 51494 | 0.7 | 0.46093 |
|
Target: 5'- ---cCGCuGCCGCCAGcu--CGGCUACa -3' miRNA: 3'- ggaaGCG-CGGCGGUCucauGCCGAUG- -5' |
|||||||
| 18424 | 3' | -56.8 | NC_004681.1 | + | 20661 | 0.72 | 0.362094 |
|
Target: 5'- uCCgccaGCGCCGCCAuuuGUGCGGCg-- -3' miRNA: 3'- -GGaag-CGCGGCGGUcu-CAUGCCGaug -5' |
|||||||
| 18424 | 3' | -56.8 | NC_004681.1 | + | 59688 | 0.74 | 0.292173 |
|
Target: 5'- ----aGCGCCGCCacgcccccugcugGGAGUGCGGcCUGCc -3' miRNA: 3'- ggaagCGCGGCGG-------------UCUCAUGCC-GAUG- -5' |
|||||||
| 18424 | 3' | -56.8 | NC_004681.1 | + | 26446 | 1.12 | 0.000691 |
|
Target: 5'- cCCUUCGCGCCGCCAGAGUACGGCUACg -3' miRNA: 3'- -GGAAGCGCGGCGGUCUCAUGCCGAUG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home