miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18424 5' -52.8 NC_004681.1 + 11661 0.66 0.915693
Target:  5'- cGGUGCuGAUcc--GCGACUGGAAGccGGa -3'
miRNA:   3'- aCCAUG-CUGauacCGCUGACCUUC--CC- -5'
18424 5' -52.8 NC_004681.1 + 49595 0.67 0.881549
Target:  5'- cUGGUugcgcAgGACcccGGCGACUGGGcaguAGGGc -3'
miRNA:   3'- -ACCA-----UgCUGauaCCGCUGACCU----UCCC- -5'
18424 5' -52.8 NC_004681.1 + 65328 0.67 0.858024
Target:  5'- aGGUGCGGCa--GGCcGCUGucGGGGu -3'
miRNA:   3'- aCCAUGCUGauaCCGcUGACcuUCCC- -5'
18424 5' -52.8 NC_004681.1 + 43895 0.67 0.849712
Target:  5'- cGGU-CGccuCUAUGGCuGCUGGAAGa- -3'
miRNA:   3'- aCCAuGCu--GAUACCGcUGACCUUCcc -5'
18424 5' -52.8 NC_004681.1 + 60276 0.68 0.841176
Target:  5'- cUGGUcacugccccgGCGACUgAUGcagcGCGGCagUGGGAGGGu -3'
miRNA:   3'- -ACCA----------UGCUGA-UAC----CGCUG--ACCUUCCC- -5'
18424 5' -52.8 NC_004681.1 + 36396 0.68 0.82347
Target:  5'- gUGGUACGACguggacggGGCGAacggcGGguGGGu -3'
miRNA:   3'- -ACCAUGCUGaua-----CCGCUga---CCuuCCC- -5'
18424 5' -52.8 NC_004681.1 + 43797 0.69 0.765952
Target:  5'- cGGUguacugcgGCGGCgg-GGUGugUuGGAGGGGu -3'
miRNA:   3'- aCCA--------UGCUGauaCCGCugA-CCUUCCC- -5'
18424 5' -52.8 NC_004681.1 + 70300 0.69 0.755833
Target:  5'- cGGaUAUGACg--GGCcaGACgUGGAAGGGc -3'
miRNA:   3'- aCC-AUGCUGauaCCG--CUG-ACCUUCCC- -5'
18424 5' -52.8 NC_004681.1 + 50398 0.7 0.724778
Target:  5'- ---cACGACUAcGGCGACUGGuacuGGa -3'
miRNA:   3'- accaUGCUGAUaCCGCUGACCuu--CCc -5'
18424 5' -52.8 NC_004681.1 + 45526 0.74 0.500035
Target:  5'- aGG-GCGACgacGGCGGCUGGAAGucGGg -3'
miRNA:   3'- aCCaUGCUGauaCCGCUGACCUUC--CC- -5'
18424 5' -52.8 NC_004681.1 + 26481 1.1 0.002296
Target:  5'- cUGGUACGACUAUGGCGACUGGAAGGGu -3'
miRNA:   3'- -ACCAUGCUGAUACCGCUGACCUUCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.