miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18425 5' -54.7 NC_004681.1 + 6391 0.66 0.847137
Target:  5'- uCGAGGGggaggaggccccggcGCCgaaGCGACCGgccagcACUCCuGUCg -3'
miRNA:   3'- -GCUCCC---------------UGGa--UGUUGGU------UGAGGcCAG- -5'
18425 5' -54.7 NC_004681.1 + 4571 0.66 0.843756
Target:  5'- -cAGuGACCUuCAACCAGcCUCCGGg- -3'
miRNA:   3'- gcUCcCUGGAuGUUGGUU-GAGGCCag -5'
18425 5' -54.7 NC_004681.1 + 12250 0.66 0.835157
Target:  5'- uCGGGuggcccGGugCUGUGGCCGACUCCcgaGGUCg -3'
miRNA:   3'- -GCUC------CCugGAUGUUGGUUGAGG---CCAG- -5'
18425 5' -54.7 NC_004681.1 + 64792 0.66 0.817354
Target:  5'- gCGucauGGGGCCUGCGAuguaugucaggcCCAGCuuggcgggaucgUCCGGUa -3'
miRNA:   3'- -GCu---CCCUGGAUGUU------------GGUUG------------AGGCCAg -5'
18425 5' -54.7 NC_004681.1 + 40170 0.66 0.817354
Target:  5'- uCGAGGcgaugagauaGACCcgcgcaauCGACCGGCUCCuggGGUCg -3'
miRNA:   3'- -GCUCC----------CUGGau------GUUGGUUGAGG---CCAG- -5'
18425 5' -54.7 NC_004681.1 + 45170 0.66 0.808168
Target:  5'- gCGAGGG-CCU-CGACCGcggcggauGCUUCGG-Cg -3'
miRNA:   3'- -GCUCCCuGGAuGUUGGU--------UGAGGCCaG- -5'
18425 5' -54.7 NC_004681.1 + 56078 0.66 0.808168
Target:  5'- uGAGGG-CCUgGCAGCCgAGCaCCGG-Ca -3'
miRNA:   3'- gCUCCCuGGA-UGUUGG-UUGaGGCCaG- -5'
18425 5' -54.7 NC_004681.1 + 20791 0.66 0.808168
Target:  5'- --cGGGGCCaUGCGAUgG--UCCGGUCg -3'
miRNA:   3'- gcuCCCUGG-AUGUUGgUugAGGCCAG- -5'
18425 5' -54.7 NC_004681.1 + 32659 0.67 0.789276
Target:  5'- -cGGGGACCUG-GGCCGACaUgUGGUCc -3'
miRNA:   3'- gcUCCCUGGAUgUUGGUUG-AgGCCAG- -5'
18425 5' -54.7 NC_004681.1 + 46439 0.67 0.769756
Target:  5'- gCGcAGGuuCCcGCGGCCuGCUCCGGUa -3'
miRNA:   3'- -GC-UCCcuGGaUGUUGGuUGAGGCCAg -5'
18425 5' -54.7 NC_004681.1 + 621 0.67 0.769756
Target:  5'- uGAGGGACUcGCGGCCGcggaagaugGC-CgGGUCc -3'
miRNA:   3'- gCUCCCUGGaUGUUGGU---------UGaGgCCAG- -5'
18425 5' -54.7 NC_004681.1 + 71774 0.68 0.749694
Target:  5'- uGAGGGuuACCUugAcGCuCAGCUCUGGg- -3'
miRNA:   3'- gCUCCC--UGGAugU-UG-GUUGAGGCCag -5'
18425 5' -54.7 NC_004681.1 + 56351 0.68 0.748678
Target:  5'- uGAGGGugucgaaggugucGCCcucuUGCAGCUcGCUCgGGUCg -3'
miRNA:   3'- gCUCCC-------------UGG----AUGUUGGuUGAGgCCAG- -5'
18425 5' -54.7 NC_004681.1 + 35080 0.68 0.70512
Target:  5'- -uGGGGuaacauguacgacaGCCaugGCAACCGGCUCUGGUa -3'
miRNA:   3'- gcUCCC--------------UGGa--UGUUGGUUGAGGCCAg -5'
18425 5' -54.7 NC_004681.1 + 47094 0.7 0.579753
Target:  5'- -cAGGG-CCUGCAACaggaAugUCCGGUa -3'
miRNA:   3'- gcUCCCuGGAUGUUGg---UugAGGCCAg -5'
18425 5' -54.7 NC_004681.1 + 27064 1.09 0.001693
Target:  5'- uCGAGGGACCUACAACCAACUCCGGUCu -3'
miRNA:   3'- -GCUCCCUGGAUGUUGGUUGAGGCCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.