miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18426 3' -55.1 NC_004681.1 + 45114 0.66 0.835069
Target:  5'- -cGGgGC-CGACgccGUCGcgcAGGUCuACACCu -3'
miRNA:   3'- caCCgCGuGCUG---UAGC---UCCAG-UGUGG- -5'
18426 3' -55.1 NC_004681.1 + 26476 0.66 0.834201
Target:  5'- cUGGCcugGUACGACuauggCGAcuggaagGGUCAUGCCg -3'
miRNA:   3'- cACCG---CGUGCUGua---GCU-------CCAGUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 56417 0.66 0.832459
Target:  5'- --aGCGCACaccuguuggaggcgGGCcgCGAGGUCAucguCACCc -3'
miRNA:   3'- cacCGCGUG--------------CUGuaGCUCCAGU----GUGG- -5'
18426 3' -55.1 NC_004681.1 + 59622 0.66 0.826301
Target:  5'- -gGGCGCuCGACAUCc-GG-CACGuCCa -3'
miRNA:   3'- caCCGCGuGCUGUAGcuCCaGUGU-GG- -5'
18426 3' -55.1 NC_004681.1 + 75123 0.66 0.826301
Target:  5'- cGUGGUGCAgaGCAUugcgcUGAGGUuccuagacCGCGCCg -3'
miRNA:   3'- -CACCGCGUgcUGUA-----GCUCCA--------GUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 24079 0.66 0.826301
Target:  5'- gGUGGCGC-CGugGgccagCaAGGUUccgGCGCCa -3'
miRNA:   3'- -CACCGCGuGCugUa----GcUCCAG---UGUGG- -5'
18426 3' -55.1 NC_004681.1 + 3028 0.66 0.826301
Target:  5'- -cGGCGCGCGugG-CGGugccGUCGC-CCa -3'
miRNA:   3'- caCCGCGUGCugUaGCUc---CAGUGuGG- -5'
18426 3' -55.1 NC_004681.1 + 69094 0.66 0.826301
Target:  5'- -aGGUucGCGCGG-AUCGAGGUCguugucgcACACUg -3'
miRNA:   3'- caCCG--CGUGCUgUAGCUCCAG--------UGUGG- -5'
18426 3' -55.1 NC_004681.1 + 6929 0.66 0.817339
Target:  5'- cGUGGCGCuucaGGCuGUCGccGUCACGguCCa -3'
miRNA:   3'- -CACCGCGug--CUG-UAGCucCAGUGU--GG- -5'
18426 3' -55.1 NC_004681.1 + 32316 0.66 0.817339
Target:  5'- uUGGCGCuu--CGUCaAGGUC-CGCCa -3'
miRNA:   3'- cACCGCGugcuGUAGcUCCAGuGUGG- -5'
18426 3' -55.1 NC_004681.1 + 51001 0.66 0.817339
Target:  5'- -cGGCGU-CGACGUCGGGGa-GCucuuCCa -3'
miRNA:   3'- caCCGCGuGCUGUAGCUCCagUGu---GG- -5'
18426 3' -55.1 NC_004681.1 + 66953 0.66 0.817339
Target:  5'- -cGcGCGCcgagcucgaagGCGACAUCGGGGacagUCACgucgGCCu -3'
miRNA:   3'- caC-CGCG-----------UGCUGUAGCUCC----AGUG----UGG- -5'
18426 3' -55.1 NC_004681.1 + 34705 0.66 0.808192
Target:  5'- -gGGcCGCAUcccCAUCGAGGUggaggaggcgUACACCg -3'
miRNA:   3'- caCC-GCGUGcu-GUAGCUCCA----------GUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 26507 0.66 0.79887
Target:  5'- aUGGgGCAgaACAUCGA-GUCGCGCa -3'
miRNA:   3'- cACCgCGUgcUGUAGCUcCAGUGUGg -5'
18426 3' -55.1 NC_004681.1 + 20646 0.66 0.79887
Target:  5'- -gGGUGUccucggACuACAUCGAGGUCAcCGCg -3'
miRNA:   3'- caCCGCG------UGcUGUAGCUCCAGU-GUGg -5'
18426 3' -55.1 NC_004681.1 + 30261 0.66 0.79887
Target:  5'- -cGGCcgGUACGGCGUCGAGac--CACCg -3'
miRNA:   3'- caCCG--CGUGCUGUAGCUCcaguGUGG- -5'
18426 3' -55.1 NC_004681.1 + 24401 0.66 0.79887
Target:  5'- -aGGUGCuggaaaacgGCGACuUCGAgcuGGUC-CACCa -3'
miRNA:   3'- caCCGCG---------UGCUGuAGCU---CCAGuGUGG- -5'
18426 3' -55.1 NC_004681.1 + 46953 0.66 0.79887
Target:  5'- -aGGCGguUGAuCAUCGGGGU---GCCg -3'
miRNA:   3'- caCCGCguGCU-GUAGCUCCAgugUGG- -5'
18426 3' -55.1 NC_004681.1 + 710 0.66 0.796041
Target:  5'- -aGGCGCggaggaaguucucgACGGCGUCGAuGG-CGC-CCu -3'
miRNA:   3'- caCCGCG--------------UGCUGUAGCU-CCaGUGuGG- -5'
18426 3' -55.1 NC_004681.1 + 26253 0.66 0.789383
Target:  5'- gGUGGgGCAUGACGgacuccUCGGcGG-CAuCACCa -3'
miRNA:   3'- -CACCgCGUGCUGU------AGCU-CCaGU-GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.