Results 41 - 60 of 75 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18426 | 3' | -55.1 | NC_004681.1 | + | 18366 | 0.68 | 0.729552 |
Target: 5'- gGUGGCGCcauCGACAUgGcAGGcCAgGCg -3' miRNA: 3'- -CACCGCGu--GCUGUAgC-UCCaGUgUGg -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 66934 | 0.69 | 0.655695 |
Target: 5'- -cGGCugaaccacCACGAgguUGUCGAGGUCcACACCg -3' miRNA: 3'- caCCGc-------GUGCU---GUAGCUCCAG-UGUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 7369 | 0.69 | 0.655695 |
Target: 5'- -cGGCGCAcuCGGCGcCGAGGUgGacgGCCg -3' miRNA: 3'- caCCGCGU--GCUGUaGCUCCAgUg--UGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 67036 | 0.69 | 0.666388 |
Target: 5'- -cGGCGCGCGGCAcCaGGG-C-CGCCa -3' miRNA: 3'- caCCGCGUGCUGUaGcUCCaGuGUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 72238 | 0.69 | 0.623529 |
Target: 5'- -aGaGCGCaACGugAUCGAaGGUCGCAa- -3' miRNA: 3'- caC-CGCG-UGCugUAGCU-CCAGUGUgg -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 27621 | 0.69 | 0.655695 |
Target: 5'- gGUGGCGCugGCGGCGgcggCGGcucuGGUCGCcgauCCa -3' miRNA: 3'- -CACCGCG--UGCUGUa---GCU----CCAGUGu---GG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 15949 | 0.69 | 0.623529 |
Target: 5'- cUGGCGCcaucuCGuuCAUUGGGGUguCGCCa -3' miRNA: 3'- cACCGCGu----GCu-GUAGCUCCAguGUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 11867 | 0.69 | 0.659975 |
Target: 5'- -cGGCGCGCgcagcguaccGACGUCaccgaggacgacgaaGAGGUCAuguuCACCg -3' miRNA: 3'- caCCGCGUG----------CUGUAG---------------CUCCAGU----GUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 66646 | 0.69 | 0.666388 |
Target: 5'- -cGGCGcuCugGGCAUCGGGGggUAC-CCg -3' miRNA: 3'- caCCGC--GugCUGUAGCUCCa-GUGuGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 12080 | 0.69 | 0.655695 |
Target: 5'- -aGGCcgaGUACGugGcCGAGGUC-CGCCc -3' miRNA: 3'- caCCG---CGUGCugUaGCUCCAGuGUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 54992 | 0.7 | 0.57441 |
Target: 5'- uGUGGCGCAa-GC-UCGgccugaagugccuucAGGUCGCGCCc -3' miRNA: 3'- -CACCGCGUgcUGuAGC---------------UCCAGUGUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 18737 | 0.7 | 0.602105 |
Target: 5'- -gGGCG-ACGGCggCGAGGcCGCGCg -3' miRNA: 3'- caCCGCgUGCUGuaGCUCCaGUGUGg -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 62234 | 0.7 | 0.612809 |
Target: 5'- cUGuGCGCGCG-CAUCGccaAGGUCuucguccaccGCGCCg -3' miRNA: 3'- cAC-CGCGUGCuGUAGC---UCCAG----------UGUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 47148 | 0.7 | 0.57441 |
Target: 5'- -gGGUGCGCGcucgugcacauccuCGUCGGGGUCGgGCUc -3' miRNA: 3'- caCCGCGUGCu-------------GUAGCUCCAGUgUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 66318 | 0.7 | 0.612809 |
Target: 5'- uUGcCGCGCGACGUCGcauugcaguucGGGUCcuugcaGCGCCa -3' miRNA: 3'- cACcGCGUGCUGUAGC-----------UCCAG------UGUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 22861 | 0.7 | 0.601036 |
Target: 5'- gGUGGgGUcgucaauGCGACAcUCGAGGuUCAC-CCg -3' miRNA: 3'- -CACCgCG-------UGCUGU-AGCUCC-AGUGuGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 57892 | 0.7 | 0.591426 |
Target: 5'- -cGGCgGCGCGGCG-CGuGGUCGCGgucuCCg -3' miRNA: 3'- caCCG-CGUGCUGUaGCuCCAGUGU----GG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 60817 | 0.7 | 0.570173 |
Target: 5'- -cGGCGUAgGuguCAcgCGGGGUCGCAUCc -3' miRNA: 3'- caCCGCGUgCu--GUa-GCUCCAGUGUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 42119 | 0.7 | 0.591426 |
Target: 5'- uUGGCGCGCacgagguuGGCGUCGAcaaGG-CugGCCg -3' miRNA: 3'- cACCGCGUG--------CUGUAGCU---CCaGugUGG- -5' |
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18426 | 3' | -55.1 | NC_004681.1 | + | 52372 | 0.71 | 0.518001 |
Target: 5'- aGUGGCccgcgGCGCGAUGUCGAgGGUCGgAUg -3' miRNA: 3'- -CACCG-----CGUGCUGUAGCU-CCAGUgUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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