Results 1 - 20 of 75 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
18426 | 3' | -55.1 | NC_004681.1 | + | 27323 | 1.13 | 0.000918 |
Target: 5'- cGUGGCGCACGACAUCGAGGUCACACCg -3' miRNA: 3'- -CACCGCGUGCUGUAGCUCCAGUGUGG- -5' |
|||||||
18426 | 3' | -55.1 | NC_004681.1 | + | 27506 | 0.84 | 0.090424 |
Target: 5'- cUGGgGCACGccucAgAUCGAGGUCGCACCg -3' miRNA: 3'- cACCgCGUGC----UgUAGCUCCAGUGUGG- -5' |
|||||||
18426 | 3' | -55.1 | NC_004681.1 | + | 62914 | 0.79 | 0.193007 |
Target: 5'- uGUGGUGCGCGACAUCGucaGUCAgGCg -3' miRNA: 3'- -CACCGCGUGCUGUAGCuc-CAGUgUGg -5' |
|||||||
18426 | 3' | -55.1 | NC_004681.1 | + | 47877 | 0.76 | 0.288188 |
Target: 5'- -gGGCGCcucgcgggugaauGCGGCAUCGAGGuucuucaUCugGCCa -3' miRNA: 3'- caCCGCG-------------UGCUGUAGCUCC-------AGugUGG- -5' |
|||||||
18426 | 3' | -55.1 | NC_004681.1 | + | 50571 | 0.73 | 0.402097 |
Target: 5'- uUGGCGCAgGACAcggUCGGGGUgggCGuCGCCc -3' miRNA: 3'- cACCGCGUgCUGU---AGCUCCA---GU-GUGG- -5' |
|||||||
18426 | 3' | -55.1 | NC_004681.1 | + | 20544 | 0.73 | 0.438957 |
Target: 5'- -gGGCG-GCGACcaccuugcuGUCGAuGGUCGCGCCu -3' miRNA: 3'- caCCGCgUGCUG---------UAGCU-CCAGUGUGG- -5' |
|||||||
18426 | 3' | -55.1 | NC_004681.1 | + | 58866 | 0.72 | 0.497654 |
Target: 5'- -cGGUGCGCGugacacCAUCGGGGgucucCACGCUg -3' miRNA: 3'- caCCGCGUGCu-----GUAGCUCCa----GUGUGG- -5' |
|||||||
18426 | 3' | -55.1 | NC_004681.1 | + | 9076 | 0.72 | 0.501696 |
Target: 5'- gGUGGCGC-CGACAgCGAGGagGCcgaggaggcggugaaGCCg -3' miRNA: 3'- -CACCGCGuGCUGUaGCUCCagUG---------------UGG- -5' |
|||||||
18426 | 3' | -55.1 | NC_004681.1 | + | 58733 | 0.72 | 0.487616 |
Target: 5'- cGUGGCGCAgGACAccUUGAGGg---GCCg -3' miRNA: 3'- -CACCGCGUgCUGU--AGCUCCagugUGG- -5' |
|||||||
18426 | 3' | -55.1 | NC_004681.1 | + | 39866 | 0.72 | 0.467833 |
Target: 5'- -cGGCGgGCGAgGUCuucgGGGGUCAUGCUg -3' miRNA: 3'- caCCGCgUGCUgUAG----CUCCAGUGUGG- -5' |
|||||||
18426 | 3' | -55.1 | NC_004681.1 | + | 46772 | 0.72 | 0.477674 |
Target: 5'- -cGcGCGCACGGCGUCacGGUCAUcCCg -3' miRNA: 3'- caC-CGCGUGCUGUAGcuCCAGUGuGG- -5' |
|||||||
18426 | 3' | -55.1 | NC_004681.1 | + | 63692 | 0.72 | 0.477674 |
Target: 5'- aGUGGUGCGCcGCGgacUCGucauGGUCGCACa -3' miRNA: 3'- -CACCGCGUGcUGU---AGCu---CCAGUGUGg -5' |
|||||||
18426 | 3' | -55.1 | NC_004681.1 | + | 58774 | 0.72 | 0.477674 |
Target: 5'- aUGGUGuCACGcgcacCGUCGAGGcgCGCGCCc -3' miRNA: 3'- cACCGC-GUGCu----GUAGCUCCa-GUGUGG- -5' |
|||||||
18426 | 3' | -55.1 | NC_004681.1 | + | 69235 | 0.72 | 0.487616 |
Target: 5'- aGUGGCcaGCGCGuCAUCGgcuGGGUCuguccgACACCu -3' miRNA: 3'- -CACCG--CGUGCuGUAGC---UCCAG------UGUGG- -5' |
|||||||
18426 | 3' | -55.1 | NC_004681.1 | + | 44738 | 0.71 | 0.507785 |
Target: 5'- -cGGCGCcuuCGACGUCGAGGacucccUCGCGg- -3' miRNA: 3'- caCCGCGu--GCUGUAGCUCC------AGUGUgg -5' |
|||||||
18426 | 3' | -55.1 | NC_004681.1 | + | 52372 | 0.71 | 0.518001 |
Target: 5'- aGUGGCccgcgGCGCGAUGUCGAgGGUCGgAUg -3' miRNA: 3'- -CACCG-----CGUGCUGUAGCU-CCAGUgUGg -5' |
|||||||
18426 | 3' | -55.1 | NC_004681.1 | + | 18737 | 0.7 | 0.602105 |
Target: 5'- -gGGCG-ACGGCggCGAGGcCGCGCg -3' miRNA: 3'- caCCGCgUGCUGuaGCUCCaGUGUGg -5' |
|||||||
18426 | 3' | -55.1 | NC_004681.1 | + | 60817 | 0.7 | 0.570173 |
Target: 5'- -cGGCGUAgGuguCAcgCGGGGUCGCAUCc -3' miRNA: 3'- caCCGCGUgCu--GUa-GCUCCAGUGUGG- -5' |
|||||||
18426 | 3' | -55.1 | NC_004681.1 | + | 54992 | 0.7 | 0.57441 |
Target: 5'- uGUGGCGCAa-GC-UCGgccugaagugccuucAGGUCGCGCCc -3' miRNA: 3'- -CACCGCGUgcUGuAGC---------------UCCAGUGUGG- -5' |
|||||||
18426 | 3' | -55.1 | NC_004681.1 | + | 62234 | 0.7 | 0.612809 |
Target: 5'- cUGuGCGCGCG-CAUCGccaAGGUCuucguccaccGCGCCg -3' miRNA: 3'- cAC-CGCGUGCuGUAGC---UCCAG----------UGUGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home