miRNA display CGI


Results 41 - 60 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18426 3' -55.1 NC_004681.1 + 33386 0.68 0.708756
Target:  5'- -cGGCGCGacCGGCGUCGA--UgACACCc -3'
miRNA:   3'- caCCGCGU--GCUGUAGCUccAgUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 17675 0.68 0.708756
Target:  5'- -cGGCGCuuGGCcgCGGcGUCACugCc -3'
miRNA:   3'- caCCGCGugCUGuaGCUcCAGUGugG- -5'
18426 3' -55.1 NC_004681.1 + 50096 0.68 0.729552
Target:  5'- -cGGCGCGCGGgAUgGuGGUCu--CCa -3'
miRNA:   3'- caCCGCGUGCUgUAgCuCCAGuguGG- -5'
18426 3' -55.1 NC_004681.1 + 27191 0.68 0.684491
Target:  5'- -aGGCGCGCGcuaccgggcgaaguACAcCGGcGUCGCGCCc -3'
miRNA:   3'- caCCGCGUGC--------------UGUaGCUcCAGUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 4519 0.68 0.729552
Target:  5'- cGUGGUcuacgACGACAUCGAGG-CugACg -3'
miRNA:   3'- -CACCGcg---UGCUGUAGCUCCaGugUGg -5'
18426 3' -55.1 NC_004681.1 + 18366 0.68 0.729552
Target:  5'- gGUGGCGCcauCGACAUgGcAGGcCAgGCg -3'
miRNA:   3'- -CACCGCGu--GCUGUAgC-UCCaGUgUGg -5'
18426 3' -55.1 NC_004681.1 + 5105 0.67 0.760027
Target:  5'- aGUGGaggGCACGcuguuCGUUGAGcGUCACcCCg -3'
miRNA:   3'- -CACCg--CGUGCu----GUAGCUC-CAGUGuGG- -5'
18426 3' -55.1 NC_004681.1 + 65273 0.67 0.749979
Target:  5'- gGUGGCGCuugGCGGCGUCGuag-UAgACCg -3'
miRNA:   3'- -CACCGCG---UGCUGUAGCuccaGUgUGG- -5'
18426 3' -55.1 NC_004681.1 + 7451 0.67 0.760027
Target:  5'- uUGGCGggaggcuucgcCGCGGCggCGGGGUCA-GCCc -3'
miRNA:   3'- cACCGC-----------GUGCUGuaGCUCCAGUgUGG- -5'
18426 3' -55.1 NC_004681.1 + 39941 0.67 0.779739
Target:  5'- uUGGCGCGCG-CGggCGcGGUgCGCGCg -3'
miRNA:   3'- cACCGCGUGCuGUa-GCuCCA-GUGUGg -5'
18426 3' -55.1 NC_004681.1 + 2435 0.67 0.779739
Target:  5'- uUGGCGCGCGGCAcgcaGAaGUgGgCGCCg -3'
miRNA:   3'- cACCGCGUGCUGUag--CUcCAgU-GUGG- -5'
18426 3' -55.1 NC_004681.1 + 53812 0.67 0.779739
Target:  5'- aUGGCG-ACGAgGUCGGcgacGGUCauggACACCc -3'
miRNA:   3'- cACCGCgUGCUgUAGCU----CCAG----UGUGG- -5'
18426 3' -55.1 NC_004681.1 + 66953 0.66 0.817339
Target:  5'- -cGcGCGCcgagcucgaagGCGACAUCGGGGacagUCACgucgGCCu -3'
miRNA:   3'- caC-CGCG-----------UGCUGUAGCUCC----AGUG----UGG- -5'
18426 3' -55.1 NC_004681.1 + 3028 0.66 0.826301
Target:  5'- -cGGCGCGCGugG-CGGugccGUCGC-CCa -3'
miRNA:   3'- caCCGCGUGCugUaGCUc---CAGUGuGG- -5'
18426 3' -55.1 NC_004681.1 + 24079 0.66 0.826301
Target:  5'- gGUGGCGC-CGugGgccagCaAGGUUccgGCGCCa -3'
miRNA:   3'- -CACCGCGuGCugUa----GcUCCAG---UGUGG- -5'
18426 3' -55.1 NC_004681.1 + 32316 0.66 0.817339
Target:  5'- uUGGCGCuu--CGUCaAGGUC-CGCCa -3'
miRNA:   3'- cACCGCGugcuGUAGcUCCAGuGUGG- -5'
18426 3' -55.1 NC_004681.1 + 26253 0.66 0.789383
Target:  5'- gGUGGgGCAUGACGgacuccUCGGcGG-CAuCACCa -3'
miRNA:   3'- -CACCgCGUGCUGU------AGCU-CCaGU-GUGG- -5'
18426 3' -55.1 NC_004681.1 + 30261 0.66 0.79887
Target:  5'- -cGGCcgGUACGGCGUCGAGac--CACCg -3'
miRNA:   3'- caCCG--CGUGCUGUAGCUCcaguGUGG- -5'
18426 3' -55.1 NC_004681.1 + 24401 0.66 0.79887
Target:  5'- -aGGUGCuggaaaacgGCGACuUCGAgcuGGUC-CACCa -3'
miRNA:   3'- caCCGCG---------UGCUGuAGCU---CCAGuGUGG- -5'
18426 3' -55.1 NC_004681.1 + 20646 0.66 0.79887
Target:  5'- -gGGUGUccucggACuACAUCGAGGUCAcCGCg -3'
miRNA:   3'- caCCGCG------UGcUGUAGCUCCAGU-GUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.