miRNA display CGI


Results 1 - 20 of 75 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18426 3' -55.1 NC_004681.1 + 27323 1.13 0.000918
Target:  5'- cGUGGCGCACGACAUCGAGGUCACACCg -3'
miRNA:   3'- -CACCGCGUGCUGUAGCUCCAGUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 27506 0.84 0.090424
Target:  5'- cUGGgGCACGccucAgAUCGAGGUCGCACCg -3'
miRNA:   3'- cACCgCGUGC----UgUAGCUCCAGUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 62914 0.79 0.193007
Target:  5'- uGUGGUGCGCGACAUCGucaGUCAgGCg -3'
miRNA:   3'- -CACCGCGUGCUGUAGCuc-CAGUgUGg -5'
18426 3' -55.1 NC_004681.1 + 47877 0.76 0.288188
Target:  5'- -gGGCGCcucgcgggugaauGCGGCAUCGAGGuucuucaUCugGCCa -3'
miRNA:   3'- caCCGCG-------------UGCUGUAGCUCC-------AGugUGG- -5'
18426 3' -55.1 NC_004681.1 + 50571 0.73 0.402097
Target:  5'- uUGGCGCAgGACAcggUCGGGGUgggCGuCGCCc -3'
miRNA:   3'- cACCGCGUgCUGU---AGCUCCA---GU-GUGG- -5'
18426 3' -55.1 NC_004681.1 + 20544 0.73 0.438957
Target:  5'- -gGGCG-GCGACcaccuugcuGUCGAuGGUCGCGCCu -3'
miRNA:   3'- caCCGCgUGCUG---------UAGCU-CCAGUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 39866 0.72 0.467833
Target:  5'- -cGGCGgGCGAgGUCuucgGGGGUCAUGCUg -3'
miRNA:   3'- caCCGCgUGCUgUAG----CUCCAGUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 58774 0.72 0.477674
Target:  5'- aUGGUGuCACGcgcacCGUCGAGGcgCGCGCCc -3'
miRNA:   3'- cACCGC-GUGCu----GUAGCUCCa-GUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 46772 0.72 0.477674
Target:  5'- -cGcGCGCACGGCGUCacGGUCAUcCCg -3'
miRNA:   3'- caC-CGCGUGCUGUAGcuCCAGUGuGG- -5'
18426 3' -55.1 NC_004681.1 + 63692 0.72 0.477674
Target:  5'- aGUGGUGCGCcGCGgacUCGucauGGUCGCACa -3'
miRNA:   3'- -CACCGCGUGcUGU---AGCu---CCAGUGUGg -5'
18426 3' -55.1 NC_004681.1 + 69235 0.72 0.487616
Target:  5'- aGUGGCcaGCGCGuCAUCGgcuGGGUCuguccgACACCu -3'
miRNA:   3'- -CACCG--CGUGCuGUAGC---UCCAG------UGUGG- -5'
18426 3' -55.1 NC_004681.1 + 58733 0.72 0.487616
Target:  5'- cGUGGCGCAgGACAccUUGAGGg---GCCg -3'
miRNA:   3'- -CACCGCGUgCUGU--AGCUCCagugUGG- -5'
18426 3' -55.1 NC_004681.1 + 58866 0.72 0.497654
Target:  5'- -cGGUGCGCGugacacCAUCGGGGgucucCACGCUg -3'
miRNA:   3'- caCCGCGUGCu-----GUAGCUCCa----GUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 9076 0.72 0.501696
Target:  5'- gGUGGCGC-CGACAgCGAGGagGCcgaggaggcggugaaGCCg -3'
miRNA:   3'- -CACCGCGuGCUGUaGCUCCagUG---------------UGG- -5'
18426 3' -55.1 NC_004681.1 + 44738 0.71 0.507785
Target:  5'- -cGGCGCcuuCGACGUCGAGGacucccUCGCGg- -3'
miRNA:   3'- caCCGCGu--GCUGUAGCUCC------AGUGUgg -5'
18426 3' -55.1 NC_004681.1 + 52372 0.71 0.518001
Target:  5'- aGUGGCccgcgGCGCGAUGUCGAgGGUCGgAUg -3'
miRNA:   3'- -CACCG-----CGUGCUGUAGCU-CCAGUgUGg -5'
18426 3' -55.1 NC_004681.1 + 60817 0.7 0.570173
Target:  5'- -cGGCGUAgGuguCAcgCGGGGUCGCAUCc -3'
miRNA:   3'- caCCGCGUgCu--GUa-GCUCCAGUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 47148 0.7 0.57441
Target:  5'- -gGGUGCGCGcucgugcacauccuCGUCGGGGUCGgGCUc -3'
miRNA:   3'- caCCGCGUGCu-------------GUAGCUCCAGUgUGG- -5'
18426 3' -55.1 NC_004681.1 + 54992 0.7 0.57441
Target:  5'- uGUGGCGCAa-GC-UCGgccugaagugccuucAGGUCGCGCCc -3'
miRNA:   3'- -CACCGCGUgcUGuAGC---------------UCCAGUGUGG- -5'
18426 3' -55.1 NC_004681.1 + 42119 0.7 0.591426
Target:  5'- uUGGCGCGCacgagguuGGCGUCGAcaaGG-CugGCCg -3'
miRNA:   3'- cACCGCGUG--------CUGUAGCU---CCaGugUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.